View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5079_high_14 (Length: 259)

Name: NF5079_high_14
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5079_high_14
NF5079_high_14
[»] chr2 (4 HSPs)
chr2 (20-250)||(29352283-29352512)
chr2 (22-250)||(34325309-34325534)
chr2 (33-84)||(44918495-44918546)
chr2 (23-84)||(44937806-44937867)
[»] chr7 (5 HSPs)
chr7 (20-153)||(30249803-30249936)
chr7 (26-153)||(25628196-25628323)
chr7 (175-249)||(30249960-30250031)
chr7 (41-81)||(5442395-5442435)
chr7 (41-81)||(5451405-5451445)
[»] chr8 (1 HSPs)
chr8 (22-250)||(4027903-4028127)
[»] chr5 (3 HSPs)
chr5 (26-153)||(30651571-30651698)
chr5 (26-153)||(31777917-31778044)
chr5 (23-91)||(42637352-42637420)
[»] chr4 (3 HSPs)
chr4 (23-96)||(48741982-48742055)
chr4 (50-86)||(1327288-1327324)
chr4 (50-102)||(4877827-4877879)
[»] chr6 (2 HSPs)
chr6 (42-84)||(1146409-1146451)
chr6 (22-102)||(32744853-32744933)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 29352512 - 29352283
Alignment:
Q  20 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29352512 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattcaggaac 29352413  T
Q  120 ctattggagtagggaggaatggtgatatattctttgnnnnnnnnnnnnnnnnnnntagtctgctatgatttaagtacacgcatggttgatgaggaacttg 219  Q
    |||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||| ||||||||||    
T  29352412 ctattggagtagggaggaatggtgatatattcttt-caaaaaaaagataaaaaaatagtctgctatgatttaagtacacgcatggttgaggaggaacttg 29352314  T
Q  220 gtcttgaagaagcaccatcaaatagaataat 250  Q
    |||||||||||||||||||||||||||||||    
T  29352313 gtcttgaagaagcaccatcaaatagaataat 29352283  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 34325309 - 34325534
Alignment:
Q  22 gactacctttgacatattaattttaggtgaacttggtgt-gagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaacc 120  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||| ||  ||     
T  34325309 gactacctttgacatatcgattttaggtgaacttggtgttgagtgaatcatggactaagctcttcactattggaccttttcccttctacattgagagact 34325408  T
Q  121 tattggagtagggaggaatggtgatatattctttgnnnnnnnnnnnnnnnnnnntagtctgctatgatttaagtacacgcatggttgatgaggaacttgg 220  Q
    |||||||| | ||||||||||||||||||| |||                    |||||||||||||||||||||||| ||||||   ||||||||| ||    
T  34325409 tattggagcaaggaggaatggtgatatatt-tttcgaaaaaaaagatgaaaaaatagtctgctatgatttaagtacacacatggt---tgaggaactcgg 34325504  T
Q  221 tcttgaagaagcaccatcaaatagaataat 250  Q
    ||||||||||||||||||||||||||||||    
T  34325505 tcttgaagaagcaccatcaaatagaataat 34325534  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 44918546 - 44918495
Alignment:
Q  33 acatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctt 84  Q
    |||||| |||||||||||||||||||| ||  ||||| ||||||||||||||    
T  44918546 acatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctt 44918495  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 44937867 - 44937806
Alignment:
Q  23 actacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctt 84  Q
    ||||| ||| |||||| |||||| |||||||| || ||||  ||||||||||||||||||||    
T  44937867 actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctt 44937806  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 30249803 - 30249936
Alignment:
Q  20 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaac 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30249803 aagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattgaggaac 30249902  T
Q  120 ctattggagtagggaggaatggtgatatattctt 153  Q
    ||||||||||||||| ||||||||||||||||||    
T  30249903 ctattggagtagggaagaatggtgatatattctt 30249936  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 25628196 - 25628323
Alignment:
Q  26 acctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaacctattg 125  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||  |  | ||  | | |||||||    
T  25628196 acctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactcttcattattggacctttatccgacctttttatgtatcctattg 25628295  T
Q  126 gagtagggaggaatggtgatatattctt 153  Q
    ||| |||||| |||||||||||||||||    
T  25628296 gagcagggagtaatggtgatatattctt 25628323  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 30249960 - 30250031
Alignment:
Q  175 tagtctgctatgatttaagtacacgcatggttgatgaggaacttggtcttgaagaagcaccatcaaatagaataa 249  Q
    |||||||||||||||||||||||| |||| |   ||||||| |  ||||||||||| ||||||||||||||||||    
T  30249960 tagtctgctatgatttaagtacacacatgtt---tgaggaaatcagtcttgaagaaccaccatcaaatagaataa 30250031  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 5442395 - 5442435
Alignment:
Q  41 attttaggtgaacttggtgtgagtgaatcatggactaaact 81  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  5442395 attttaggtgaaattggtgtgaaagaatcatggactaaact 5442435  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 5451405 - 5451445
Alignment:
Q  41 attttaggtgaacttggtgtgagtgaatcatggactaaact 81  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  5451405 attttaggtgaaattggtgtgaaagaatcatggactaaact 5451445  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4027903 - 4028127
Alignment:
Q  22 gactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaacct 121  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||  ||||    
T  4027903 gactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctctattgagagacct 4028002  T
Q  122 attggagtagggaggaatggtgatatattctttgnnnnnnnnnnnnnnnnnnntagtctgctatgatttaagtacacgcatggttgatgaggaacttggt 221  Q
    ||||||| |||||||||||||||||||||| ||                    ||||||||||||||||||| |||| ||||||   ||||||||| |||    
T  4028003 attggagcagggaggaatggtgatatattc-ttcaaaaaaaaaggtaaaaaaatagtctgctatgatttaagcacacacatggt---tgaggaactcggt 4028098  T
Q  222 cttgaagaagcaccatcaaatagaataat 250  Q
    |||||||||||||||||||||||||||||    
T  4028099 cttgaagaagcaccatcaaatagaataat 4028127  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 30651571 - 30651698
Alignment:
Q  26 acctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaacctattg 125  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||  |  | ||  | | |||||||    
T  30651571 acctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggacctttgtccgacctttttacgtatcctattg 30651670  T
Q  126 gagtagggaggaatggtgatatattctt 153  Q
    ||| |||||| |||||||||||||||||    
T  30651671 gagcagggagtaatggtgatatattctt 30651698  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 31777917 - 31778044
Alignment:
Q  26 acctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcccttctatattcaggaacctattg 125  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||  |  | |   | | |||||||    
T  31777917 acctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggacctttgtccgaccttttaacgtatcctattg 31778016  T
Q  126 gagtagggaggaatggtgatatattctt 153  Q
    ||| |||||| |||||||||||||||||    
T  31778017 gagcagggagtaatggtgatatattctt 31778044  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 42637420 - 42637352
Alignment:
Q  23 actacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactatt 91  Q
    ||||| ||| |||||| |||||| |||||| | || ||||  ||||||||||| |||||||||||||||    
T  42637420 actacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttcactatt 42637352  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 48742055 - 48741982
Alignment:
Q  23 actacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacc 96  Q
    |||||||||  ||||| ||||||||||||||| |||||||  ||||| |||||||||||||||| | |||||||    
T  48742055 actaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacc 48741982  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 1327288 - 1327324
Alignment:
Q  50 gaacttggtgtgagtgaatcatggactaaactcttca 86  Q
    ||||||||||| || ||||||||||||||||||||||    
T  1327288 gaacttggtgttagagaatcatggactaaactcttca 1327324  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 4877827 - 4877879
Alignment:
Q  50 gaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcc 102  Q
    ||||||||||| || |||||||||||||||||||| | ||| ||||| |||||    
T  4877827 gaacttggtgttagagaatcatggactaaactctttattatcggacccttgcc 4877879  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 1146409 - 1146451
Alignment:
Q  42 ttttaggtgaacttggtgtgagtgaatcatggactaaactctt 84  Q
    ||||||||||  ||||||||||||||| |||||||||||||||    
T  1146409 ttttaggtgagtttggtgtgagtgaattatggactaaactctt 1146451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 32744933 - 32744853
Alignment:
Q  22 gactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgcc 102  Q
    |||||| ||| |||||| |||| | |||||  ||||| |||  ||||||||||| || ||||||||||||||||| |||||    
T  32744933 gactacttttcacatatcaattatgggtgagattggtatgaaagaatcatggaccaatctcttcactattggaccattgcc 32744853  T

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