View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_high_16 (Length: 234)
Name: NF5079_high_16
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 11571732 - 11571640
Alignment:
| Q |
12 |
tgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactccccttttgacatcaac |
104 |
Q |
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| T |
11571732 |
tgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactccccttttgtcatcaac |
11571640 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 11571592 - 11571522
Alignment:
| Q |
152 |
catgaataattctatgtaccagatgcaataaaatatacaaaattaaagcatcagaaattaatgaaaacatt |
222 |
Q |
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| T |
11571592 |
catgaataattctatgtaccagatgcaataaaatatacaaaattaaagcatcagaaattaaagaaaacatt |
11571522 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 11514522 - 11514603
Alignment:
| Q |
12 |
tgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactcccctttt |
95 |
Q |
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| T |
11514522 |
tgagaagaaggttctcctaaattgatttt--ttaatttagtggacttagagcctaaatgatattacgtatcttactcccctttt |
11514603 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 15552711 - 15552782
Alignment:
| Q |
34 |
taattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactcccc-ttttgacatcaac |
104 |
Q |
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| T |
15552711 |
taattttatttaatttagtggactcagagcctaaatgtcattatatatcttactccccgttttgtcatcaac |
15552782 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 10327808 - 10327750
Alignment:
| Q |
12 |
tgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatg |
70 |
Q |
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| T |
10327808 |
tgagaagaaggttttcctaaattaattttatttaacttagcggactcagagcctaaatg |
10327750 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 22996397 - 22996334
Alignment:
| Q |
12 |
tgagaagaagattctcctaaactaattttatt--taatttagtggactcggagcctaaatgtta |
73 |
Q |
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| T |
22996397 |
tgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgtta |
22996334 |
T |
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