View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_high_2 (Length: 614)
Name: NF5079_high_2
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 24 - 608
Target Start/End: Complemental strand, 48666639 - 48666055
Alignment:
| Q |
24 |
tggatcgccttcaggtctaaatttttgagtctcaaaacagattctacatgtcctctgagcgtgtgcaattcccccagcctgcaatgcattttataattta |
123 |
Q |
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| T |
48666639 |
tggatcgccttcaggtctaaatttttgagtttcaaaacagattctacatgtcctctgagcgtgtgcaattcccccagcctggaatgcattttataattta |
48666540 |
T |
|
| Q |
124 |
atcagtaacacaactttaagtgggggatcaagggtgttatggagaaggatttgccaagtaataaatgtgagtcaaatagtagagatcattcaagagaaac |
223 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48666539 |
atcagtaacacaactttaagttggggatcaagggtgttatggagaaggatttgccaagtaataaatgcgagtcaaatagtagagatcattcaagagaaac |
48666440 |
T |
|
| Q |
224 |
aggtaagaaggtgattactaatgaatgagccaaaattgaacgtacctggctatttcagcacgtcttctggcctgttcagctatcatagaagaccgccttc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666439 |
aggtaagaaggtgattactaatgaatgagccaaaattgaatgtacctggctatttcagcacgtcttctggcctgttcagctatcatagaagaccgccttc |
48666340 |
T |
|
| Q |
324 |
cactgacctccaagcctgaggtcatctgattcagtccttgcagacttccctgagaaagaacccactttgctgccctgtcttccgtcccatagtctttctt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666339 |
cactgacctccaagcctgaggtcatctgattcagtccttgcagacttccctgagaaagaacccactttgctgccctgtcttccgtcccatagtctttctt |
48666240 |
T |
|
| Q |
424 |
agatgtaaaagcagtctgttgaaatagacaaatcaatacacataccacaactagcaaaggcttatctaattgggacaacattataaggcgaaactggagg |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666239 |
agatgtaaaagcagtctgttgaaatagacaaatcaatacgcataccacaactagcaaaggcttatctaattgggacaacattataaggcgaaactggagg |
48666140 |
T |
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| Q |
524 |
gattctttactaacctttctgtcaaataggagattccatgcttctccactcaaggcatagcgcactgtgaacttgatgatgtcca |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666139 |
gattctttactaacctttctgtcaaataggagattccatgcttctccactcaaggcatagcgcactgtgaacttgatgatgtcca |
48666055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 8600207 - 8600130
Alignment:
| Q |
372 |
cctgagaaagaacccactttgctgccctgtcttccgtcccatagtctttcttagatgtaaaagcagtctgttgaaata |
449 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8600207 |
cctgagaaagaacccactttgctgccctatcttccgtcccatagtctttcttagatgtaaaagcagtctgttaaaata |
8600130 |
T |
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