View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5079_high_3 (Length: 585)

Name: NF5079_high_3
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5079_high_3
NF5079_high_3
[»] chr6 (33 HSPs)
chr6 (271-578)||(10115648-10115955)
chr6 (19-206)||(10115456-10115643)
chr6 (206-372)||(3404760-3404926)
chr6 (213-381)||(34572899-34573067)
chr6 (281-375)||(15480314-15480408)
chr6 (236-474)||(30680910-30681156)
chr6 (280-376)||(19305487-19305583)
chr6 (200-390)||(14268440-14268630)
chr6 (205-381)||(18147324-18147500)
chr6 (280-380)||(689830-689929)
chr6 (274-393)||(20148323-20148440)
chr6 (274-393)||(22184388-22184505)
chr6 (215-475)||(34187216-34187478)
chr6 (213-372)||(11087529-11087688)
chr6 (277-376)||(9277270-9277368)
chr6 (271-394)||(9291983-9292105)
chr6 (293-374)||(4251029-4251110)
chr6 (302-374)||(16130993-16131065)
chr6 (214-376)||(22572068-22572229)
chr6 (321-376)||(31295548-31295603)
chr6 (302-376)||(33596884-33596958)
chr6 (280-374)||(34064220-34064314)
chr6 (280-373)||(17380123-17380216)
chr6 (285-353)||(12203615-12203683)
chr6 (234-376)||(12449508-12449651)
chr6 (302-365)||(31423831-31423894)
chr6 (315-376)||(14080507-14080567)
chr6 (281-329)||(22692162-22692210)
chr6 (281-376)||(9403195-9403290)
chr6 (281-395)||(19730564-19730678)
chr6 (277-327)||(27772534-27772584)
chr6 (303-371)||(18566685-18566753)
chr6 (335-395)||(25008417-25008477)
[»] chr4 (14 HSPs)
chr4 (205-419)||(47253250-47253471)
chr4 (271-390)||(19809710-19809829)
chr4 (302-395)||(12683789-12683882)
chr4 (280-372)||(19643729-19643821)
chr4 (213-486)||(10981772-10982050)
chr4 (213-350)||(2674479-2674616)
chr4 (234-395)||(15514486-15514648)
chr4 (232-390)||(19818702-19818862)
chr4 (237-376)||(15742081-15742221)
chr4 (322-395)||(14602029-14602102)
chr4 (271-327)||(50151767-50151823)
chr4 (212-331)||(40978975-40979094)
chr4 (395-473)||(3981869-3981947)
chr4 (280-393)||(5518546-5518659)
[»] chr5 (16 HSPs)
chr5 (216-393)||(27083146-27083322)
chr5 (226-475)||(20025200-20025456)
chr5 (212-393)||(26994510-26994691)
chr5 (302-485)||(22903000-22903190)
chr5 (213-395)||(8938916-8939097)
chr5 (287-374)||(34493542-34493625)
chr5 (302-376)||(25333758-25333832)
chr5 (213-262)||(19990976-19991025)
chr5 (82-149)||(27083009-27083076)
chr5 (302-376)||(32418480-32418554)
chr5 (280-381)||(24647306-24647407)
chr5 (302-394)||(25537410-25537502)
chr5 (233-316)||(24546424-24546509)
chr5 (325-381)||(19993182-19993238)
chr5 (280-376)||(22865784-22865880)
chr5 (205-260)||(26163756-26163812)
[»] chr8 (18 HSPs)
chr8 (224-376)||(13754781-13754933)
chr8 (233-485)||(26916822-26917082)
chr8 (280-485)||(30477548-30477760)
chr8 (205-375)||(6927991-6928157)
chr8 (213-381)||(13765007-13765175)
chr8 (302-376)||(21416761-21416835)
chr8 (233-381)||(18322961-18323110)
chr8 (233-373)||(17698209-17698350)
chr8 (218-339)||(23497074-23497194)
chr8 (302-374)||(24507482-24507554)
chr8 (302-486)||(17927698-17927889)
chr8 (307-376)||(3459482-3459552)
chr8 (307-372)||(24070879-24070945)
chr8 (205-393)||(5859821-5860009)
chr8 (302-395)||(15058039-15058132)
chr8 (228-327)||(23269306-23269406)
chr8 (235-376)||(24576509-24576651)
chr8 (285-329)||(23963432-23963476)
[»] chr2 (19 HSPs)
chr2 (218-395)||(45258062-45258239)
chr2 (213-395)||(45714999-45715181)
chr2 (213-376)||(3586386-3586549)
chr2 (216-381)||(36267516-36267681)
chr2 (213-483)||(27846424-27846701)
chr2 (276-395)||(12127631-12127750)
chr2 (302-392)||(24499796-24499886)
chr2 (302-374)||(12168998-12169070)
chr2 (302-485)||(19919060-19919250)
chr2 (305-395)||(20120351-20120441)
chr2 (321-376)||(18770337-18770392)
chr2 (302-376)||(15825177-15825251)
chr2 (92-145)||(30001509-30001562)
chr2 (280-329)||(17658030-17658078)
chr2 (280-329)||(17672042-17672090)
chr2 (280-329)||(23257851-23257900)
chr2 (204-257)||(30001625-30001678)
chr2 (280-328)||(17626971-17627018)
chr2 (280-376)||(18135894-18135990)
[»] scaffold0023 (1 HSPs)
scaffold0023 (205-376)||(95707-95878)
[»] chr1 (21 HSPs)
chr1 (224-379)||(16030415-16030569)
chr1 (213-394)||(34273092-34273272)
chr1 (226-485)||(5459627-5459892)
chr1 (282-395)||(5671774-5671887)
chr1 (302-395)||(26977744-26977837)
chr1 (205-376)||(22414798-22414969)
chr1 (213-352)||(2140853-2140992)
chr1 (307-375)||(12177410-12177478)
chr1 (302-476)||(33101501-33101682)
chr1 (281-395)||(16050398-16050512)
chr1 (302-376)||(52565603-52565677)
chr1 (321-393)||(25408102-25408174)
chr1 (275-356)||(12032220-12032300)
chr1 (280-329)||(8019018-8019067)
chr1 (280-376)||(23728792-23728888)
chr1 (284-394)||(18246148-18246257)
chr1 (302-375)||(23280256-23280327)
chr1 (350-395)||(4601529-4601574)
chr1 (345-394)||(14255067-14255116)
chr1 (325-374)||(16299591-16299640)
chr1 (233-316)||(14254966-14255050)
[»] scaffold0360 (1 HSPs)
scaffold0360 (200-394)||(13927-14121)
[»] chr3 (17 HSPs)
chr3 (205-381)||(30606946-30607122)
chr3 (276-375)||(9801052-9801151)
chr3 (302-395)||(17143743-17143836)
chr3 (302-371)||(28715482-28715551)
chr3 (274-381)||(16704420-16704527)
chr3 (302-376)||(21342281-21342355)
chr3 (308-381)||(13085073-13085146)
chr3 (280-381)||(28723746-28723847)
chr3 (233-375)||(14860023-14860166)
chr3 (302-395)||(8122909-8123001)
chr3 (302-376)||(431310-431384)
chr3 (302-356)||(2311828-2311882)
chr3 (302-395)||(17485618-17485711)
chr3 (302-376)||(20622429-20622505)
chr3 (321-376)||(1770848-1770903)
chr3 (302-393)||(12516191-12516282)
chr3 (413-473)||(28715595-28715655)
[»] chr7 (16 HSPs)
chr7 (233-395)||(9135285-9135448)
chr7 (213-395)||(26762816-26762998)
chr7 (205-394)||(5863192-5863381)
chr7 (306-376)||(39879410-39879480)
chr7 (280-381)||(29373464-29373565)
chr7 (233-376)||(13292047-13292191)
chr7 (213-353)||(16203768-16203908)
chr7 (314-487)||(21161147-21161326)
chr7 (302-395)||(7486549-7486642)
chr7 (307-376)||(9867938-9868007)
chr7 (213-350)||(16204340-16204477)
chr7 (304-395)||(10287592-10287683)
chr7 (280-395)||(43172008-43172114)
chr7 (321-376)||(34854266-34854321)
chr7 (77-145)||(16204550-16204618)
chr7 (453-489)||(43172950-43172986)
[»] scaffold0054 (1 HSPs)
scaffold0054 (274-393)||(68768-68885)
[»] scaffold0291 (2 HSPs)
scaffold0291 (212-376)||(8485-8645)
scaffold0291 (281-393)||(15403-15515)
[»] scaffold0002 (2 HSPs)
scaffold0002 (280-378)||(120983-121081)
scaffold0002 (302-372)||(379743-379813)
[»] scaffold0380 (1 HSPs)
scaffold0380 (233-376)||(6784-6928)
[»] scaffold0140 (1 HSPs)
scaffold0140 (280-376)||(6321-6417)
[»] scaffold0505 (1 HSPs)
scaffold0505 (302-395)||(7889-7982)
[»] scaffold0294 (1 HSPs)
scaffold0294 (233-376)||(166-311)
[»] scaffold0205 (2 HSPs)
scaffold0205 (233-376)||(22909-23053)
scaffold0205 (302-395)||(10909-11002)
[»] scaffold0005 (1 HSPs)
scaffold0005 (322-395)||(215276-215349)
[»] scaffold0174 (1 HSPs)
scaffold0174 (316-390)||(29286-29358)
[»] scaffold0012 (1 HSPs)
scaffold0012 (281-328)||(149217-149264)
[»] scaffold0074 (1 HSPs)
scaffold0074 (306-375)||(35277-35347)
[»] scaffold0057 (1 HSPs)
scaffold0057 (302-352)||(73796-73846)
[»] scaffold0013 (1 HSPs)
scaffold0013 (278-394)||(4394-4510)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 271 - 578
Target Start/End: Original strand, 10115648 - 10115955
Alignment:
Q  271 ctcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgac 370  Q
    |||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  10115648 ctcacgtgtgtctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgac 10115747  T
Q  371 ttgagcattggggagctaacgtgccaccttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcc 470  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10115748 ttgagcattggggagctaacgtgtcaccttttgtcccaccgcgaagactgatcgacacaataccggaacacatactgccaccgttgcctctcatccgtcc 10115847  T
Q  471 tcaccgtacagatcaatattaatcactaagtttctccccaatgacaagtcatgcaattactacattttgcggagtaatagatttttagcatattatctgc 570  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10115848 tcaccggacagatcaatattaatcactaagtttctccccaatgacaagtcatgcaattactacattttgcggagtaatagatttttagcatattatctgc 10115947  T
Q  571 ctatgctt 578  Q
    ||||||||    
T  10115948 ctatgctt 10115955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 10115456 - 10115643
Alignment:
Q  19 cttggaacttataacttaactcnnnnnnnatgcctaaaaatgaacatgcagctatatttgttatggaccggtcagaagaccaatcctatgttgacatgtg 118  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10115456 cttggaacttataacttaactctttttttatgcctaaaaatgaacatgcagctatatttgttatggaccggtcagaagaccaatcctatgttgacatgtg 10115555  T
Q  119 gactattcatacaccgtcttaaggctcaacgtccgaaggaacgcgtcaacttcaccgcgccgcttataagcaaacttctatgtggaga 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||    
T  10115556 gactattcatacgccgtcttaaggctcaacgtccgaaggaacgcgtcaacttcaccacgccacttctaagcaaacttctgtgtggaga 10115643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 3404760 - 3404926
Alignment:
Q  206 atcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattca 305  Q
    |||||| |||||||||| ||||||| |||| ||||||||||| ||||||||  |||| |||||   |||| || |||||||||||| | | |||  ||||    
T  3404760 atcactctacacgtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctatataagggtaatttaacttca 3404859  T
Q  306 ccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgactt 372  Q
    |||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||| ||||||||||||    
T  3404860 ccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttccattactgactt 3404926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 213 - 381
Target Start/End: Original strand, 34572899 - 34573067
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||||||||| ||||| | ||||||||||||||| |||| | | |||||||| |||  ||||| || |||||||||||| |||||||  |||||||||||    
T  34572899 tacacgtgtcctctaatcactccctaatcacacgtcgcatatcatggagatgattattctcacacgcgcctatataagggtgacttaacttcaccctcaa 34572998  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
     |||||||||||||||||| | ||||| ||| |||| ||||| ||||  |||||| |||||||| ||||    
T  34572999 tgtatgattcacttttcaccacactttctacacactttttcttagttctattactaacttgagcgttgg 34573067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 15480314 - 15480408
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||| |||||||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgag 15480408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 236 - 474
Target Start/End: Complemental strand, 30681156 - 30680910
Alignment:
Q  236 ctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaa 334  Q
    ||||||||||||||||||||  ||||  |||||  |||| |||| |||||| ||| | |||| | | |||| |||||||||||||||||||||||||||     
T  30681156 ctaatcacacgccgcaaaactcggaggcggttattctcaacgcgcgcctatctaaaggtgacattgcttcatcctcaaggtatgattcacttttcacaat 30681057  T
Q  335 actttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgt-------gccaccttttgtcccaccgcgaagactgatcgaca 427  Q
    || || ||| | |||||| ||||||||||||||||||||||| |||| | ||||||||       | ||||||| ||||||||||||||||| |||  ||    
T  30681056 acattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatctcca 30680957  T
Q  428 caataccggaacacattctgccaccgttgcctctcatccgtcctcac 474  Q
    |  ||||||| ||| | | ||||||||||  ||| |||| |||||||    
T  30680956 ccttaccggagcacctcccgccaccgttgtttcttatccatcctcac 30680910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 19305583 - 19305487
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||| ||||| |||| | | |||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||| ||||||||||||||||    
T  19305583 gcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagc 19305487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 200 - 390
Target Start/End: Complemental strand, 14268630 - 14268440
Alignment:
Q  200 gtggagatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgactta 299  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||||  ||| || ||| | |||||   |   |||||||||||||||| |||||||    
T  14268630 gtggggatcaccttacacgtgtcctctaaccgctccctaatcacacgccataaaccc-ggaaacggttatctttgtgcgtgcctatataagggtgactta 14268532  T
Q  300 gattcaccc-tcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaac 390  Q
    | ||||||| ||| | |||||||||||||||| || ||||| ||| |||| | ||| |||| |||||||||||| ||| |||| | ||||||    
T  14268531 gcttcacccctcacgatatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttcagcgttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 205 - 381
Target Start/End: Complemental strand, 18147500 - 18147324
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcac-gcgtgcctatataaggctgacttagatt 303  Q
    |||||| |||||| |||| |||||||| ||||||||||||||| ||||||||  |||  |||||  | ||  |||  ||||||||||| |||| | | ||    
T  18147500 gatcaccttacacatgtcctctaaccg-tccctaatcacacgctgcaaaacccagaggcggttaatcccaatgcgcacctatataagggtgacattgctt 18147402  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    |||||| ||||||||| ||||||||||||| ||||| ||| ||||||||||| ||| ||||| |||||||||| ||||    
T  18147401 caccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtgacttgagcgttgg 18147324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 380
Target Start/End: Original strand, 689830 - 689929
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||||| |||| | ||| || |||||||||| |||||||||||||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||    
T  689830 gcctatataagggtgaccttgat-cagcctcaaggtacgattcacttttcacaacactttatacacacactttctcagttccattactgacttgagcatt 689928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 20148440 - 20148323
Alignment:
Q  274 acgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttg 373  Q
    |||||||||||||||||| |||| | | |||||| ||||||||||||||||||||||||| ||||| ||  |||||||||||| || ||||||| |||||    
T  20148440 acgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttcta--cactctttctcaattccattactaacttg 20148343  T
Q  374 agcattggggagctaacgtg 393  Q
    |||  ||| | |||||||||    
T  20148342 agcgatggagtgctaacgtg 20148323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 22184388 - 22184505
Alignment:
Q  274 acgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttg 373  Q
    |||||||||||||||||| |||| | | |||||| ||||||||||||||||||||||||| ||||| ||  |||||||||||| || ||||||| |||||    
T  22184388 acgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttcta--cactctttctcaattccattactaacttg 22184485  T
Q  374 agcattggggagctaacgtg 393  Q
    |||  ||| | |||||||||    
T  22184486 agcgatggagtgctaacgtg 22184505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 215 - 475
Target Start/End: Complemental strand, 34187478 - 34187216
Alignment:
Q  215 cacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaagg 314  Q
    |||||||| |||||  | ||||||||||||||| ||| | || ||||| |||||  ||||||  ||||||||||||| |||    | |||||||||||||    
T  34187478 cacgtgtcctctaattgatccctaatcacacgctgcatatcccggagacggttattctcacgtatgcctatataagggtga----gcttcaccctcaagg 34187383  T
Q  315 tatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgt-------gccaccttttgtccc 407  Q
    ||  ||||||||| ||| | ||||| ||| ||||||||||||||| |||||||||||||||  |||| | ||||||||       | ||||||| || ||    
T  34187382 tacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttcc 34187284  T
Q  408 accgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcacc 475  Q
    ||||| |||||| |||  |||  || |||||||| ||| ||| |||||||||||||| | ||||||||    
T  34187283 accgcaaagacttatcaccactgtagcggaacactttccgccgccgttgcctctcattcatcctcacc 34187216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 372
Target Start/End: Complemental strand, 11087688 - 11087529
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctca 311  Q
    |||||||||| |||||||| ||| |||| |||||||||| || | |||||  ||||  |||| ||||  ||||||||||| |||  | | |||| |||||    
T  11087688 tacacgtgtcctctaaccg-tccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaacttgtttcatcctca 11087590  T
Q  312 aggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgactt 372  Q
    |||||||||||||||||||||| ||  | |||  |||||||||||||| ||||||||||||    
T  11087589 aggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgactt 11087529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 9277270 - 9277368
Alignment:
Q  277 cgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||| ||||||| ||| |||| ||||||||||||||||||||||| |||| | | ||||| |||  |||||||||||||| || |||||||||||||    
T  9277270 cgtgcctgtataagggtgagttagcttcaccctcaaggtatgattcac-tttctccacactttttacatactctttctcagttccaatactgacttgagc 9277368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 271 - 394
Target Start/End: Original strand, 9291983 - 9292105
Alignment:
Q  271 ctcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgac 370  Q
    |||||| | |||||||||| | ||| |||| |||||||||||||||||||||||||||| | | ||||| |||  ||| |||||||||| || |||||||    
T  9291983 ctcacgtgcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc-ccacactttttacatactatttctcagttccaatactgac 9292081  T
Q  371 ttgagcattggggagctaacgtgc 394  Q
    |||||| || | | ||||||||||    
T  9292082 ttgagcgttagcgtgctaacgtgc 9292105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 4251029 - 4251110
Alignment:
Q  293 tgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    |||||| | |||||||||||| ||||||| ||||||||||| ||| | | | |||||||||||| |||||||||||||||||    
T  4251029 tgactttgcttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgacttga 4251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 16131065 - 16130993
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    ||||||||||||||||||||||| |||||||| ||||| |   |||||||| |||||| ||||||||||||||    
T  16131065 ttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgacttga 16130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 376
Target Start/End: Complemental strand, 22572229 - 22572068
Alignment:
Q  214 acacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    ||||||||| |||||||| |||||||||| ||  |||| |||||||||| |||||  |||| |||| ||| |||||| | |||  | | |||||||||||    
T  22572229 acacgtgtcctctaaccg-tccctaatcatacttcgcataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctcaa 22572131  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    | ||||||||||||| ||||| || || ||| |||||||| ||| || |||||||||| |||||    
T  22572130 gatatgattcactttacacaacaccttctacacactcttt-tcaattccattactgacatgagc 22572068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 31295548 - 31295603
Alignment:
Q  321 tcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||| ||||  ||| ||||||||||||||||||||||||||||||||    
T  31295548 tcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagc 31295603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 33596958 - 33596884
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||| ||||||||||||||||  ||||||||| ||||| ||| |||| ||||| |||||||||||||| ||||||    
T  33596958 ttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgagc 33596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 34064314 - 34064220
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    |||||||||||| |||  | | |||||||||||||||    ||||||||||||| ||||  ||| |||||||||| |||||||||||||||||||    
T  34064314 gcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgacttga 34064220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 17380216 - 17380123
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttg 373  Q
    |||||||||||| |||| | |  ||| ||| |||||| |||||||||||||||| ||||| | | |||||||||||||||  ||||||||||||    
T  17380216 gcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttctattactgacttg 17380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 12203615 - 12203683
Alignment:
Q  285 tataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttc 353  Q
    ||||||| |||||||  ||||||||||| |||||||||||||||||||| ||||| |||  ||||||||    
T  12203615 tataagggtgacttaacttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 12449508 - 12449651
Alignment:
Q  234 ccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcaca 332  Q
    |||||||||||| | ||| ||||||||||  |||| |||  ||||| |||||||||||| | |  | |||||||||||||||||    ||||||| ||||    
T  12449508 ccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactttccaca 12449607  T
Q  333 aaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    | ||||  ||| |||||||| |||| | ||||||||||||||||    
T  12449608 acacttcttacacactctttttcagctccattactgacttgagc 12449651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 31423831 - 31423894
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcatta 365  Q
    ||||||||||||  ||||||||||| |||||| ||||| |||  ||||||||||||||||||||    
T  31423831 ttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtttcatta 31423894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 14080567 - 14080507
Alignment:
Q  315 tatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||||||||| ||||  ||| ||||||||||||| ||||||||| ||||||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctcag-ttcattactaacttgagc 14080507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 22692210 - 22692162
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcacttttc 329  Q
    ||||||||| | |||||||| |||||||||||| |||||||||||||||    
T  22692210 cctatataaaggtgacttagcttcaccctcaagttatgattcacttttc 22692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 9403290 - 9403195
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||| |||  | | |||||||||||||||    ||||||| ||||| ||||  ||| ||||||||||||||| ||||| ||||||||||    
T  9403290 cctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttgagc 9403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 395
Target Start/End: Original strand, 19730564 - 19730678
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattg 380  Q
    ||||||||||| |||  | | |||||||||||||||    ||||||| ||| | ||||  ||| ||||||||||||||| ||||| |||||||||| |||    
T  19730564 cctatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgacttgagcgttg 19730663  T
Q  381 gggagctaacgtgcc 395  Q
    | | |||||| ||||    
T  19730664 gagtgctaacatgcc 19730678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 27772534 - 27772584
Alignment:
Q  277 cgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttt 327  Q
    ||||||||||||||| |||| | | |||||| |||||||||||||||||||    
T  27772534 cgtgcctatataagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 18566753 - 18566685
Alignment:
Q  303 tcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgact 371  Q
    ||||||||||||||   ||||||||| ||||  |||| ||| || |||||||||||| |||||||||||    
T  18566753 tcaccctcaaggtagacttcactttttacaacgctttctacacaatctttctcagttccattactgact 18566685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 25008417 - 25008477
Alignment:
Q  335 actttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||| ||| |||||||||||| || |||||||||||||||| |||| | | |||||||||    
T  25008417 actttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgcc 25008477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 419
Target Start/End: Complemental strand, 47253471 - 47253250
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattc 304  Q
    ||||||| |||| ||||| |||||  |||| |||||||||| |||||||||| |||||  ||||   ||| ||| |||||||||||| |||||||| |||    
T  47253471 gatcactctacatgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatcatgcgcgcctatataagggtgacttagcttc 47253372  T
Q  305 accctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc-------cac 397  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||| |||| | |||||| |||       |||    
T  47253371 accctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcac 47253272  T
Q  398 cttttgtcccaccgcgaagact 419  Q
    ||||||||||||| ||||||||    
T  47253271 cttttgtcccaccccgaagact 47253250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 271 - 390
Target Start/End: Complemental strand, 19809829 - 19809710
Alignment:
Q  271 ctcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgac 370  Q
    |||||||| |||||| ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||| ||| |||||||||| |||||||||||||||    
T  19809829 ctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagtttcattactgac 19809730  T
Q  371 ttgagcattggggagctaac 390  Q
    |||||| |||| | ||||||    
T  19809729 ttgagcgttggagtgctaac 19809710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 12683882 - 12683789
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| |||| | |||||||||||    
T  12683882 ttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcc 12683789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 19643821 - 19643729
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgactt 372  Q
    |||||||||||| |||  | | |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||    
T  19643821 gcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttccattactgactt 19643729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 213 - 486
Target Start/End: Complemental strand, 10982050 - 10981772
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||| ||||| ||||||||||||||||||||| |||||| | || ||||  |||||  ||||| |  | |||||||||| |||||||| ||| ||| |||    
T  10982050 tacatgtgtcctctaaccgctccctaatcacaagccgcatatcccggaggcggttattctcacacacgtctatataagggtgacttagtttctccc-caa 10981952  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgt-------gccaccttttgtc 405  Q
     |||||||||||||||| | | ||||| ||| ||||||||||| ||| |||||||||||||||  |||| | || |||||       | ||||||| |||    
T  10981951 tgtatgattcacttttc-ccacactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtc 10981853  T
Q  406 ccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatcaa 486  Q
    |||| ||||||||| |||  |||  ||| ||| |||||||  |||  |||||||||||||| |||||| || |||||||||    
T  10981852 ccactgcgaagactcatcatcaccgtactggagcacattccaccattgttgcctctcatccatcctcatcggacagatcaa 10981772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 2674479 - 2674616
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctga-cttagattcaccctc 310  Q
    |||||||||| |||||| | |||||||||||||||||||||| | ||||| |||||  |||| |||| || ||||||||| ||| ||||  |||| ||||    
T  2674479 tacacgtgtcctctaactg-tccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttac-ttcatcctc 2674576  T
Q  311 aaggtatgattcacttttcacaaaactttgtactcactct 350  Q
    ||||||||||||||||||||||| ||||| ||| ||||||    
T  2674577 aaggtatgattcacttttcacaacactttctacacactct 2674616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 395
Target Start/End: Original strand, 15514486 - 15514648
Alignment:
Q  234 ccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcaca 332  Q
    ||||||||| | |||||| |||||||||||||||| |||    ||| |||||||||||| |||  | | |||||||||||||||    ||||||| ||||    
T  15514486 ccctaatcatatgccgcataacctggagatggttatgaccagggcgagcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccaca 15514585  T
Q  333 aaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    | ||||  ||| |||||||| |||||| |||||||||||||||| |||| | |||||||||||    
T  15514586 acacttcttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcc 15514648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 390
Target Start/End: Complemental strand, 19818862 - 19818702
Alignment:
Q  232 ctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggc--tgacttagattcaccctcaaggtatgattcacttttc 329  Q
    ||||||||||| |||||   ||||| ||||| |||||  |||||| | |||||| |||||   |||||||| |||| | ||||||||| |||||||||||    
T  19818862 ctccctaatcatacgcctataaaccaggagaaggttattctcacgtgcgcctatgtaagggcgtgacttagtttcatcatcaaggtataattcacttttc 19818763  T
Q  330 acaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaac 390  Q
    |||| ||||| ||| |||||||  |  |||| | ||||||||||||| |||| | ||||||    
T  19818762 acaacactttctacacactcttgattggtttaagtactgacttgagcgttggagtgctaac 19818702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 15742081 - 15742221
Alignment:
Q  237 taatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaa 335  Q
    ||||||||||||||| |||| ||||| ||||| | |  || || |||||||||||| ||| || | ||||  |||||||||    ||||||||||||| |    
T  15742081 taatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaaca 15742180  T
Q  336 ctttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||  ||| |||| |||||||||| ||||||||||||||||    
T  15742181 cttcttacacactttttctcagttccattactgacttgagc 15742221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 14602029 - 14602102
Alignment:
Q  322 cacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||| ||||  ||| |||||| | ||||||||||||||||||||||| ||||   |||||||||||    
T  14602029 cacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcc 14602102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 50151767 - 50151823
Alignment:
Q  271 ctcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttt 327  Q
    |||||||  |||||||||||| |||||| | |||||||||||||||||||| |||||    
T  50151767 ctcacgcacgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 40978975 - 40979094
Alignment:
Q  212 ttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctca 311  Q
    |||||| |||| |||||||  |||||||||||| || ||| |  | |||||||||||  ||| |||  || || |||||| |||||||  ||||||||||    
T  40978975 ttacacatgtcctctaaccattccctaatcacatgctgcatattccggagatggttattctcgcgcacgcttagataagggtgacttaacttcaccctca 40979074  T
Q  312 aggtatgattcacttttcac 331  Q
    || || ||||||||||||||    
T  40979075 agatacgattcacttttcac 40979094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 3981947 - 3981869
Alignment:
Q  395 caccttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctca 473  Q
    ||||||| || |||||| ||||||| |||  |||  ||||||||||  ||| |||||||||||||||||||| ||||||    
T  3981947 cacctttcgttccaccgtgaagactcatcctcactgtaccggaacattttccgccaccgttgcctctcatccatcctca 3981869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 5518659 - 5518546
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||||| |||  | | ||||||||||||||| |  ||||||| ||||| ||||  ||| || ||| ||||||||  ||||||||||||||| ||    
T  5518659 gcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattctctctcagttcaattactgacttgagcgtt 5518560  T
Q  380 ggggagctaacgtg 393  Q
    |  | |||||||||    
T  5518559 gaagtgctaacgtg 5518546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 216 - 393
Target Start/End: Original strand, 27083146 - 27083322
Alignment:
Q  216 acgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggt 315  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||||  ||||  |||||||| ||||||  |||| |||||||  ||||||||||||||    
T  27083146 acgtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggt 27083245  T
Q  316 atgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtg 393  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||||||| |||||||||||||  |||| | |||||||||    
T  27083246 atgattcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtg 27083322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 226 - 475
Target Start/End: Complemental strand, 20025456 - 20025200
Alignment:
Q  226 taaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcact 325  Q
    ||||| |||||||||||||| || ||||||| ||||| |||||  |||||||| |||| ||||||| |||| ||| ||||||||||||| ||||||||||    
T  20025456 taaccactccctaatcacacaccacaaaacccggagacggttattctcacgcgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcact 20025357  T
Q  326 tttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgt-------gccaccttttgtcccaccgcgaagac 418  Q
    || ||||| ||||| ||| |||||||||||||||||||| |||||   ||| |||| | | ||||||       | ||||||| ||||||||||||||||    
T  20025356 ttacacaacactttctacacactctttctcagtttcattcctgacagtagcgttggagtgttaacgtgtgtgcagacacctttcgtcccaccgcgaagac 20025257  T
Q  419 tgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcacc 475  Q
    | || |||||  ||||  | ||||||| |||||   |||||||||||| ||||||||    
T  20025256 tcattgacaccgtaccaaagcacattccgccactagtgcctctcatccatcctcacc 20025200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 393
Target Start/End: Original strand, 26994510 - 26994691
Alignment:
Q  212 ttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctc 310  Q
    ||||| ||||| ||||| || |||||||||||||||||||||||  | ||| |||||  |||| |||| |||||||||||| |||| | | ||||||| |    
T  26994510 ttacatgtgtcctctaatcg-tccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcaccccc 26994608  T
Q  311 aaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtg 393  Q
    ||||||||||||||||||||||| || || ||  |||||||||||| || |||||||||||||||| | || | |||||||||    
T  26994609 aaggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgagcgtcggagtgctaacgtg 26994691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 302 - 485
Target Start/End: Complemental strand, 22903190 - 22903000
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc------ 395  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||| |||  | |||||| ||||          
T  22903190 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaa 22903091  T
Q  396 -accttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatca 485  Q
     |||||| || |||||||||| ||| |||  |||  ||| | | ||| ||| |||| ||||||||||||||| |||||| || ||||||||    
T  22903090 aacctttcgttccaccgcgaaaactcatcaccaccgtactgaagcactttccgccaacgttgcctctcatccatcctcatcggacagatca 22903000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 213 - 395
Target Start/End: Complemental strand, 8939097 - 8938916
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||| ||||| |||||||||||||||||||||||||||| | || ||||   ||||  ||||| |    |||||||| | |||||||| |||||||||||    
T  8939097 tacatgtgtcctctaaccgctccctaatcacacgccgcatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaa 8938998  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
     |||||||||||||||| | | ||||| ||| ||||||||||||||| || |||||||| ||||||||| | | |||||||||    
T  8938997 tgtatgattcacttttc-ccacactttttacacactctttctcagttccaatactgactagagcattggagtgttaacgtgcc 8938916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 34493625 - 34493542
Alignment:
Q  287 taaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||  |||||||  ||| || ||||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggtatgattcacttttcacaacactttcta--cactctt--tcaattccattactgacttga 34493542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 25333832 - 25333758
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||| ||||| ||||||||||||||| |||| ||||| ||| |||||| ||| |||| ||||||||||||||||    
T  25333832 ttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacattactgacttgagc 25333758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 19990976 - 19991025
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggaga 262  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  19990976 tacacatgtcttctaaccgctccctaatcacacgccgcgaaacttggaga 19991025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 27083009 - 27083076
Alignment:
Q  82 tggaccggtcagaagaccaatcctatgttgacatgtggactattcatacaccgtcttaaggctcaacg 149  Q
    ||||||||| | ||||||||||||||||||||| ||||||||| | |||  || ||||||||||||||    
T  27083009 tggaccggttaaaagaccaatcctatgttgacacgtggactatacttacgtcgccttaaggctcaacg 27083076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 32418480 - 32418554
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||| ||||||||||||||||||| ||||||| ||| | ||| ||||||||||| ||| ||| | ||||||||||    
T  32418480 ttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctctgttccatcagtgacttgagc 32418554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 24647407 - 24647306
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||||| |||  | | |||||||| |||||||   ||||||||||||| ||||  ||| |||||||| |||||| ||||||||| |||||| ||    
T  24647407 gcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgagcgtt 24647308  T
Q  380 gg 381  Q
    ||    
T  24647307 gg 24647306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 25537502 - 25537410
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc 394  Q
    ||||||||||||||||   ||||||||||||| ||||  ||| || |||||||||||| ||||||   ||||||| |||| | ||||||||||    
T  25537502 ttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctcagttccattacaatcttgagcgttggagtgctaacgtgc 25537410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 24546509 - 24546424
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctg-acttagattcaccctcaaggta 316  Q
    ||||||||||||||||||| |||| ||||| ||||| | || ||||| |||||||||||| || |||| | |||||| ||||||||    
T  24546509 tccctaatcacacgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggta 24546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 19993182 - 19993238
Alignment:
Q  325 ttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    ||||||||| |||||  || | ||||||||||||| ||||||||||||||| |||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgagtattgg 19993238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 22865880 - 22865784
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||| |||  | | |||||||||||||||    ||||||||||||| | ||  ||| |||| |||||||||| ||||||| ||||||||    
T  22865880 gcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttgagc 22865784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 26163812 - 26163756
Alignment:
Q  205 gatcactttacacgtgtcttctaac-cgctccctaatcacacgccgcaaaacctgga 260  Q
    ||||||| |||||||||| |||||  |||||||| |||| |||||||||||||||||    
T  26163812 gatcactctacacgtgtcctctaaatcgctccctgatcatacgccgcaaaacctgga 26163756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 224 - 376
Target Start/End: Complemental strand, 13754933 - 13754781
Alignment:
Q  224 tctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattca 323  Q
    |||||||| || ||||||||||||||||||| | | ||| |||||  |||| |||||||||||||||  |||||||| ||||||||||||||| ||||||    
T  13754933 tctaaccgttcactaatcacacgccgcaaaatccgaagacggttattctcatgcgtgcctatataagagtgacttagcttcaccctcaaggtaggattca 13754834  T
Q  324 cttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  13754833 ctttacacaacactttctacacactctttctcagtttcattactgacttgagc 13754781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 233 - 485
Target Start/End: Original strand, 26916822 - 26917082
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    |||||||||||||||||||||||||||||  |||||  |||| |||| ||||||||||||  ||| | | ||||  |||||||||||| |||||||||||    
T  26916822 tccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttcac 26916921  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc-------caccttttgtcccaccgcgaagactgatcg 424  Q
    || ||||| ||| |||||| |||||||| |||||||||||||||| || | | ||||||||||       ||||||| || ||| | ||||||||  |||    
T  26916922 aacactttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttccatcacgaagactcgtcg 26917021  T
Q  425 acacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatca 485  Q
     |||  |||  || | | |||||||||||||||||||||||| ||||||||| ||| ||||    
T  26917022 ccactgtactagagccctttctgccaccgttgcctctcatccatcctcaccggacatatca 26917082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 280 - 485
Target Start/End: Complemental strand, 30477760 - 30477548
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||||| |||| |   |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||| ||    
T  30477760 gcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtttcgttactgacttgagcgtt 30477661  T
Q  380 ggggagctaacgtgc-------caccttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctc 472  Q
    || | ||||||||||       || |||| ||| |||||||||| || || | ||| |||| ||| ||| ||| ||||| |||||||||||||| || ||    
T  30477660 ggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcattgccaccatactggagcactttccgccactgttgcctctcatccatcatc 30477561  T
Q  473 accgtacagatca 485  Q
    |||| ||| ||||    
T  30477560 accggacaaatca 30477548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 205 - 375
Target Start/End: Original strand, 6927991 - 6928157
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagatt 303  Q
    ||||||| |||||||||| ||| |||| ||| ||||||||||| |||||||||||||| |||||  |||| |||  |||||    ||| |||  |  |||    
T  6927991 gatcactctacacgtgtcctcttaccgttcc-taatcacacgctgcaaaacctggagacggttattctcaacgcacgccta----agggtgaaattaatt 6928085  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  6928086 caccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 6928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 213 - 381
Target Start/End: Complemental strand, 13765175 - 13765007
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||||||||  ||| |||| ||| ||||||||  |||||||||  | ||| |||||  |||||||| || ||| ||||| |||||||| |||||| ||||    
T  13765175 tacacgtgttctcttaccgttccttaatcacagaccgcaaaactcgaagacggttattctcacgcgcgcttatttaagggtgacttagcttcaccttcaa 13765076  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    |  || ||||||||| ||||| ||||| ||| ||||||||||||||||||||||| |||||| ||||||    
T  13765075 gacattattcactttacacaacactttctacacactctttctcagtttcattactcacttgaacattgg 13765007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 21416835 - 21416761
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||| |||||| |||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  21416835 ttcacccttaaggtacgattcatttttcacaacactttctacacactctttctcagtttcattactgacttgagc 21416761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 18323110 - 18322961
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    |||||||||||||||||| ||||| ||||   ||||  |||| | | ||||||||||||| |||| | | |||| |||||| ||||||||||||||||||    
T  18323110 tccctaatcacacgccgcgaaacccggaggcagttattctcaactcttgcctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcac 18323011  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    || | ||| ||| || ||||||||||||  ||||||||||||||| ||||    
T  18323010 aacattttctacacaatctttctcagttctattactgacttgagcgttgg 18322961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 17698209 - 17698350
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggttagactc-acgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    |||||||||||||||||| |||   | ||| |||||  ||| ||||| ||||||||| || || | | | ||||||||||| |||| |||||||||||||    
T  17698209 tccctaatcacacgccgctaaattcgaagacggttatgctcgacgcgcgcctatatatgggtggccttgcttcaccctcaaagtataattcacttttcac 17698308  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttg 373  Q
    || ||||| ||| ||||||||||| ||| |||||||||||||    
T  17698309 aacactttctacacactctttctcggttccattactgacttg 17698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 23497074 - 23497194
Alignment:
Q  218 gtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggtat 317  Q
    ||||| |||||||||||||||||||||||  |||||||| |||||   |||   ||||| | |||||||||||| |||||| | || |||||||||||||    
T  23497074 gtgtcctctaaccgctccctaatcacacgt-gcaaaacccggagacaattatcttcacgagcgcctatataagggtgactttgcttaaccctcaaggtat 23497172  T
Q  318 gattcacttttcacaaaacttt 339  Q
    |||||||| ||||||| |||||    
T  23497173 gattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 24507554 - 24507482
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    |||||||||||||||||||||||||||||||| ||||| ||  |||||||||||| || ||||| ||||||||    
T  24507554 ttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttga 24507482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 486
Target Start/End: Original strand, 17927698 - 17927889
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc------- 394  Q
    |||||||| |||||||||||||| ||||| || ||||| |||  ||||  |||||||| |||||||||||| ||| |||| | ||||||||||           
T  17927698 ttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagtgctaacgtgcatgcatg 17927797  T
Q  395 caccttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatcaa 486  Q
    ||||||| |||||||| | |||| | |||| ||| ||||  |||||| ||| |||| || ||||||| |||| ||||||||  |||||||||    
T  17927798 cacctttcgtcccaccacaaagagtcatcgccaccatactagaacactttccgccatcgctgcctctaatccatcctcaccagacagatcaa 17927889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 3459482 - 3459552
Alignment:
Q  307 cctcaaggtatgattcacttttcacaaa-actttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||| |||| ||||||||| || ||||| ||| ||||||| ||||||| ||||||||||||||||    
T  3459482 cctcaaggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgagc 3459552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 24070945 - 24070879
Alignment:
Q  307 cctcaaggt-atgattcacttttcacaaaactttgtactcactctttctcagtttcattactgactt 372  Q
    ||||||||| ||||||||||| |||||| ||||| ||| |||||||||| |||| ||||||||||||    
T  24070945 cctcaaggttatgattcacttctcacaacactttctacacactctttcttagttccattactgactt 24070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 393
Target Start/End: Complemental strand, 5860009 - 5859821
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagatt 303  Q
    ||||||| |||||||||| | |||||| ||||||||||| |||||||||| |  |||  |||||    || |||| |||||||||||| |||| | | ||    
T  5860009 gatcactctacacgtgtcatttaaccg-tccctaatcactcgccgcaaaatccagaggcggttatttccaacgcgcgcctatataagggtgaccttgctt 5859911  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtg 393  Q
    ||  ||||||||| ||||||||| ||| || ||| |  || |||| ||||| |||| ||||| |||||||||| |||| | |||||||||    
T  5859910 caatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttgagcgttggagtgctaacgtg 5859821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 15058132 - 15058039
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||||||| | ||||||| | ||||| ||| || | ||||||| |||||||||| ||||| || |||  | |||||||||||    
T  15058132 ttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgcc 15058039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 23269406 - 23269306
Alignment:
Q  228 accgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcactt 326  Q
    ||||||||||| |||||||| |||||||  ||||| |||||  |||| | || ||||||||| || |||| | | ||||||||||||||| |||||||||    
T  23269406 accgctccctattcacacgctgcaaaactcggagacggttatcctcaacacgcgcctatatatgggtgacattgcttcaccctcaaggtacgattcactt 23269307  T
Q  327 t 327  Q
    |    
T  23269306 t 23269306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 24576509 - 24576651
Alignment:
Q  235 cctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaa 333  Q
    |||||||||||| |||| |||||||||  |||||   ||| ||||||||||||||||| |||  |   |||||||||||||||    | |||||||||||    
T  24576509 cctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtacacattacttttcacaa 24576608  T
Q  334 aactttgtactcactctttctcagtttcattactgacttgagc 376  Q
     ||||  ||| ||||| || | |||| ||||||||||||||||    
T  24576609 cacttcttacacactcatttttagttccattactgacttgagc 24576651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 23963432 - 23963476
Alignment:
Q  285 tataaggctgacttagattcaccctcaaggtatgattcacttttc 329  Q
    ||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  23963432 tataagggtgacttagcttcacccccaacgtatgattcacttttc 23963476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 218 - 395
Target Start/End: Original strand, 45258062 - 45258239
Alignment:
Q  218 gtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggtat 317  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||| |||||   ||||| |  ||||||||||| |||||| | ||||||||||||||||    
T  45258062 gtgtcctctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgcttcaccctcaaggtat 45258161  T
Q  318 gattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||| |||||  || || ||||||| |||||||||||| |||||||| |||| | | |||||||||    
T  45258162 gattcacttttcacaacactttcgacacattctttcttagtttcattacttacttgagctttggagtgttaacgtgcc 45258239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 213 - 395
Target Start/End: Complemental strand, 45715181 - 45714999
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||| ||||| |||||| |||| ||||||||||||| || | |   ||||  ||||  ||||||||||| |||| |||| |||||||| |||||| ||||    
T  45715181 tacatgtgtcctctaactgctctctaatcacacgccacatatctcagagacagttattctcacgcgtgcttatacaagggtgacttagcttcaccttcaa 45715082  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||||||||| ||||||| | ||||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  45715081 ggtatgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcc 45714999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 3586549 - 3586386
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctca 311  Q
    |||| ||||| |||||||| |||||| |||||||||||| ||||  ||   ||||| |||  ||||| |||||||||||| |||  | | ||||||||||    
T  3586549 tacatgtgtcctctaaccg-tccctattcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctatataagggtgaacttgcttcaccctca 3586451  T
Q  312 aggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||    
T  3586450 aggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttgagc 3586386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 216 - 381
Target Start/End: Complemental strand, 36267681 - 36267516
Alignment:
Q  216 acgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactc-acgcgtgcctatataaggctgacttagattcaccctcaagg 314  Q
    |||||||||||||||| |||| ||||| |||||||| || || |||| |||||  ||  ||||  | |||||||||| |||  | | |||||||||||||    
T  36267681 acgtgtcttctaaccg-tcccaaatcatacgccgcataatcttgagacggttatccttgacgcacgtctatataagggtgaacttgcttcaccctcaagg 36267583  T
Q  315 tatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    |||||||||||||||||||  |||| ||| |||||||||||||||||||||||||||||||| ||||    
T  36267582 tatgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagcgttgg 36267516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 213 - 483
Target Start/End: Original strand, 27846424 - 27846701
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttaga-ctcacgcgtgcctatataaggctgacttagattcaccctca 311  Q
    |||||||||| ||||| || ||||||||||||| | ||||||||  ||||  ||||   |||| ||||| |||| || || |||||||  ||||||||||    
T  27846424 tacacgtgtcctctaatcgttccctaatcacacac-gcaaaacccagagacagttatttctcaggcgtgtctatgtatgggtgacttaacttcaccctca 27846522  T
Q  312 aggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc-------caccttttgt 404  Q
    |||||  ||||||||| ||||| ||||| |||  ||| |||||||||| |||||||||||||| | |||| | ||||||||||       ||| ||| ||    
T  27846523 aggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgt 27846622  T
Q  405 cccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagat 483  Q
    || || ||||||||| || | |||  ||||||||||||||| | ||| |||||||||||||| ||||| ||| ||||||    
T  27846623 ccaactgcgaagactcattgccaccgtaccggaacacattccgtcactgttgcctctcatccatcctctccggacagat 27846701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 12127631 - 12127750
Alignment:
Q  276 gcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    |||||| ||||||||| |||| | | ||||||  ||| |||||||||||||||||||| ||||| ||| ||| | |||| ||||||||||||||||||||    
T  12127631 gcgtgcatatataaggttgacattgcttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgag 12127730  T
Q  376 cattggggagctaacgtgcc 395  Q
    | |||| | |||||||||||    
T  12127731 cgttggagtgctaacgtgcc 12127750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 24499886 - 24499796
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgt 392  Q
    |||||||| ||||||||||||||||||||||| | ||| ||| |||||||||||| || |||||||||||||||| |||| | ||||||||    
T  24499886 ttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagcgttggagtgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 12169070 - 12168998
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    |||||||||||||||| ||||||||||||||| ||||| ||| |||||||||| |||| ||||||||||||||    
T  12169070 ttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccattactgacttga 12168998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 302 - 485
Target Start/End: Original strand, 19919060 - 19919250
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc------ 395  Q
    |||| ||||||||||||||||||||||||||| ||||| |||  ||||||||||| || ||||| ||||||  || || | |  |||| || ||          
T  19919060 ttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccattattgactttggcgttagagttctaatgttcctgcagg 19919159  T
Q  396 -accttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatca 485  Q
     |||||| || ||||| ||||||||||||| ||| |||||||| ||| |||||||||| ||||||||||||| | ||||||| ||| ||||    
T  19919160 cacctttcgttccaccacgaagactgatcgccaccataccggagcactttctgccaccattgcctctcatccattctcaccggacatatca 19919250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 395
Target Start/End: Complemental strand, 20120441 - 20120351
Alignment:
Q  305 accctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||||||||| |||||  |||||  || |||||||||||||||||||||||||||||||  | || | |||||||||||    
T  20120441 accctcaaggtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcc 20120351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 18770392 - 18770337
Alignment:
Q  321 tcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||    
T  18770392 tcacttttcacaacactttctacacactctttctcaatttcattactgacttgagc 18770337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 15825251 - 15825177
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||||||    | ||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||    
T  15825251 ttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgacttgagc 15825177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 30001509 - 30001562
Alignment:
Q  92 agaagaccaatcctatgttgacatgtggactattcatacaccgtcttaaggctc 145  Q
    ||||||||||||| || |||||||||||||||| ||||||| | ||||||||||    
T  30001509 agaagaccaatcccatattgacatgtggactatacatacactgccttaaggctc 30001562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 17658078 - 17658030
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttc 329  Q
    |||||| ||||| |||||||| ||||||| ||||||||||||||||||||    
T  17658078 gcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc 17658030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 17672090 - 17672042
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttc 329  Q
    |||||| ||||| |||||||| ||||||| ||||||||||||||||||||    
T  17672090 gcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc 17672042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 23257900 - 23257851
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttc 329  Q
    |||||||||||| |||| | |||||||||||||||||  |||||||||||    
T  23257900 gcctatataagggtgaccttgattcaccctcaaggtacaattcacttttc 23257851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 30001625 - 30001678
Alignment:
Q  204 agatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacct 257  Q
    |||||||| |||| ||||| |||||||| |||||||| | ||||||||||||||    
T  30001625 agatcactctacatgtgtcctctaaccgttccctaattatacgccgcaaaacct 30001678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 17627018 - 17626971
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcactttt 328  Q
    |||||| ||||| |||||||| ||||||| |||||||||||||||||||    
T  17627018 gcctatttaagggtgacttagcttcaccc-caaggtatgattcactttt 17626971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 18135990 - 18135894
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||| |||  | | |||||| || ||||||   |||||||| |||| ||||  ||| ||||||||||||||| ||||||| ||||||||    
T  18135990 gcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagc 18135894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 205 - 376
Target Start/End: Original strand, 95707 - 95878
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagatt 303  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||||||||||  |||| | | ||  |  | ||||||||||||||||| |||| | | ||    
T  95707 gatcactctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgctt 95805  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||| ||||||||    
T  95806 caccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagc 95878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 224 - 379
Target Start/End: Complemental strand, 16030569 - 16030415
Alignment:
Q  224 tctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattca 323  Q
    ||||||||||||||||||||||||| ||||| | |||| | ||||   ||| | | |||||||||||| || ||||| ||| ||||||||||||||||||    
T  16030569 tctaaccgctccctaatcacacgccacaaaatccggag-tagttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggtatgattca 16030471  T
Q  324 cttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||| ||||| ||| |||||||  |||||| |||||||||||||||||||    
T  16030470 cttttcacaacactttctacacactcttattcagttccattactgacttgagcatt 16030415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 213 - 394
Target Start/End: Complemental strand, 34273272 - 34273092
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    ||||| |||| |||||||| ||| ||| | |||||||||||||||||||  |||||  | || ||   |||||||||||  ||| | | |||||||||||    
T  34273272 tacacatgtcctctaaccgttcc-taaccgcacgccgcaaaacctggaggcggttattcccaagcacacctatataagggcgacattgcttcaccctcaa 34273174  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc 394  Q
    ||||||| ||||||| ||||| ||||| ||| ||||||||||||||| | ||||||||||||||||||| | ||||||||||    
T  34273173 ggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgc 34273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 226 - 485
Target Start/End: Original strand, 5459627 - 5459892
Alignment:
Q  226 taaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcact 325  Q
    |||| |||||||||||||||||||||||||  || || |||||  |||||||| | |||| | |||||||||||  |||| || ||| ||||||||||||    
T  5459627 taactgctccctaatcacacgccgcaaaacacggtgacggttattctcacgcgcgtctatgttaggctgacttaacttcatccccaatgtatgattcact 5459726  T
Q  326 tttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc-------caccttttgtcccaccgcgaagac 418  Q
    || ||||| ||||| ||| ||||||||||||| | | ||||||  |||| | |||| | |||||||| |       ||||||| |||||||| |||||||    
T  5459727 ttacacaacactttctacacactctttctcag-tccgttactgttttgaacgttggagtgctaacgtacctgcatgcacctttcgtcccaccacgaagac 5459825  T
Q  419 tgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatca 485  Q
    | |||| |||  |||| || ||||||| |||| ||| ||||||||||| ||||||||| | ||||||    
T  5459826 tcatcgccaccgtaccagagcacattccgccatcgtcgcctctcatccatcctcaccggatagatca 5459892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 282 - 395
Target Start/End: Complemental strand, 5671887 - 5671774
Alignment:
Q  282 ctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    |||||||||  |||||||  |||||| |||| |||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||| |||||||| ||||    
T  5671887 ctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttccattactaacttgagcgttgg 5671788  T
Q  382 ggagctaacgtgcc 395  Q
     | |||||||||||    
T  5671787 agtgctaacgtgcc 5671774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 26977837 - 26977744
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||| | |||||||||||    
T  26977837 ttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccattactgacttgagcgttggagtgctaacgtgcc 26977744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 205 - 376
Target Start/End: Complemental strand, 22414969 - 22414798
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactc-acgcgtgcctatataaggctgacttagatt 303  Q
    |||||| ||||| ||||| |||||| | ||| |||||| |||||||| |||  |||||  ||||  ||| |||| |||||||| |||| |||  | | ||    
T  22414969 gatcaccttacatgtgtcatctaactg-tccataatcatacgccgcataacacggagaccgttatgctcgacgcatgcctatacaaggatgaacttgctt 22414871  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||| ||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||||    
T  22414870 caccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagc 22414798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 213 - 352
Target Start/End: Original strand, 2140853 - 2140992
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||||||||| |||||||| | ||||||||||| || ||||||| | |  ||||||  |||||||| | || ||||||| |||||||| |||||||||||    
T  2140853 tacacgtgtcctctaaccgtttcctaatcacacaccacaaaacccgaaagtggttattctcacgcgcgtctttataagggtgacttagcttcaccctcaa 2140952  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactcttt 352  Q
    |||||| |||||||| ||||| ||||| ||| || |||||    
T  2140953 ggtatggttcactttccacaacactttctacacattcttt 2140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 12177478 - 12177410
Alignment:
Q  307 cctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    ||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  12177478 cctcaaggtataattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 12177410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 476
Target Start/End: Original strand, 33101501 - 33101682
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc------- 394  Q
    |||||||||||| || | |||||||||||||| ||||| ||| |||| |||||||||| |||||| ||||||||| |||| | ||||||||||           
T  33101501 ttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatg 33101600  T
Q  395 caccttttgtcccaccgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccg 476  Q
    |||||||  | | || ||||||||| ||| ||||  ||||| ||||| ||| ||||  |||||||||||||| |||||||||    
T  33101601 cacctttcattctacagcgaagactcatcaacactgtaccgaaacactttccgccagtgttgcctctcatccatcctcaccg 33101682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 395
Target Start/End: Complemental strand, 16050512 - 16050398
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattg 380  Q
    ||||||||||| || | | | |||| |||||||||||| |||||||||||| | ||||| ||| ||||||||||||||| ||| | |||||||||| |||    
T  16050512 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 16050413  T
Q  381 gggagctaacgtgcc 395  Q
    | | |||||||||||    
T  16050412 gagtgctaacgtgcc 16050398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 52565677 - 52565603
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||| ||||||||||||||||||| ||||| | | |||||||| |||||| | ||||||||||||||    
T  52565677 ttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagc 52565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 25408174 - 25408102
Alignment:
Q  321 tcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtg 393  Q
    ||||||||||||| ||||  ||| |||||| | |||||||||||||||||||||||||||| | |||||||||    
T  25408174 tcacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtg 25408102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 12032220 - 12032300
Alignment:
Q  275 cgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctca 356  Q
    |||| |||||||||||| |||||||| |||||| ||||| ||||||||| ||| ||||| ||||| ||| ||||||||||||    
T  12032220 cgcgcgcctatataagggtgacttagtttcacc-tcaagttatgattcattttacacaacactttctacacactctttctca 12032300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 8019067 - 8019018
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttc 329  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  8019067 gcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 23728792 - 23728888
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||| |||  | | |||||||||||||||    ||||||||||||| ||||  ||| |||||||||||| || ||||| ||||||||||    
T  23728792 gcctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagc 23728888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 394
Target Start/End: Complemental strand, 18246257 - 18246148
Alignment:
Q  284 atataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgggg 383  Q
    |||||||| |||||||  |||||||||||||||||| ||||||||| | | ||||| ||  |||||||||||| ||  | |||| |||||||| |||| |    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctc-acactttttatacactctttctcaattctaatactcacttgagcgttggag 18246159  T
Q  384 agctaacgtgc 394  Q
     | ||||||||    
T  18246158 tgttaacgtgc 18246148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 23280256 - 23280327
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    |||||||||| || || ||||||||||||||| ||| |  || ||| ||||||||||| |||||||||||||||    
T  23280256 ttcaccctcatggcattattcacttttcacaacactat--acacacactttctcagttccattactgacttgag 23280327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 4601529 - 4601574
Alignment:
Q  350 tttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||||||||||||||||||||||||| | || | |||||||||||    
T  4601529 tttctcagtttcattactgacttgagcgtcggagtgctaacgtgcc 4601574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 14255067 - 14255116
Alignment:
Q  345 cactctttctcagtttcattactgacttgagcattggggagctaacgtgc 394  Q
    ||||||||||||||||||||| |||||||||| |||| | |||| |||||    
T  14255067 cactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgc 14255116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 16299591 - 16299640
Alignment:
Q  325 ttttcacaaaactttgtactcactctttctcagtttcattactgacttga 374  Q
    ||||||||| ||||  ||| ||||||||||||||||||||||| ||||||    
T  16299591 ttttcacaacacttcttacgcactctttctcagtttcattacttacttga 16299640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 14254966 - 14255050
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggta 316  Q
    |||||||||| |||||||| ||||||||||  |||| |||  | |||||||||||||||| |||  | | |||||||||||||||    
T  14254966 tccctaatcatacgccgcataacctggagaaagttatgaccaaagcgtgcctatataagggtgaacttgtttcaccctcaaggta 14255050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 200 - 394
Target Start/End: Complemental strand, 14121 - 13927
Alignment:
Q  200 gtggagatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcac-gcgtgcctatataaggctgactt 298  Q
    |||| ||||||  ||| |||||| |||||| | ||||||||||||| |||||||||||||||  |||||  | ||  ||   ||||||||||| |||  |    
T  14121 gtggggatcaccatacgcgtgtcctctaacgg-tccctaatcacacaccgcaaaacctggaggcggttattcccaatgcacacctatataagggtgatct 14023  T
Q  299 agattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc 394  Q
     | ||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||| |||| |  |||||||||    
T  14022 tgcttcaccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagctttggagtactaacgtgc 13927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 205 - 381
Target Start/End: Complemental strand, 30607122 - 30606946
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagatt 303  Q
    |||||| ||| | ||||| |||||||| ||||||||||||||| || ||||| |||||  ||||  || | |||| |||||||||||| || | |   ||    
T  30607122 gatcacgttatatgtgtcctctaaccg-tccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttactt 30607024  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||||||| || |||||||||||||||| ||||    
T  30607023 caccctcaaggtataattcacttttcacaacactttctactcactctttctcaattccattactgacttgagcgttgg 30606946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 276 - 375
Target Start/End: Original strand, 9801052 - 9801151
Alignment:
Q  276 gcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    |||||||||||||||| |||| | | |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||  ||||||||||||||    
T  9801052 gcgtgcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttctattactgacttgag 9801151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 17143743 - 17143836
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||| | || | |||||||||||    
T  17143743 ttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgcc 17143836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 28715482 - 28715551
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgact 371  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  28715482 ttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccattactgact 28715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 16704527 - 16704420
Alignment:
Q  274 acgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttg 373  Q
    ||||| |||||||||||| |||  | | |||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||  | ||||||||||||     
T  16704527 acgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctcaactccattactgacttc 16704428  T
Q  374 agcattgg 381  Q
    ||| ||||    
T  16704427 agcgttgg 16704420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 21342281 - 21342355
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||| |||||||||||||||||||| ||||| ||  |||||||| |||||| ||||||||||||||||    
T  21342281 ttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagc 21342355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 13085073 - 13085146
Alignment:
Q  308 ctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattgg 381  Q
    |||||||| ||||||||||||||||| ||||| |||  | |||||||||||||||||| |||||||||| ||||    
T  13085073 ctcaaggtttgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagcgttgg 13085146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 28723746 - 28723847
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||||| |||| | | ||||||||| || || |||||||||||||||| | ||| ||| |||||||||| |||| ||||| |||||||||| ||    
T  28723746 gcctatataaggatgacattgtttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgtt 28723845  T
Q  380 gg 381  Q
    ||    
T  28723846 gg 28723847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 14860023 - 14860166
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    |||||||||| ||||| || |||||||||| ||||| |||| | ||| |||||||||||| |||  | | |||||||||||||||    |||||||||||    
T  14860023 tccctaatcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 14860122  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    || ||||  |||  ||| |||||||||| ||||||||| |||||    
T  14860123 aacacttcttacaaactgtttctcagttccattactgagttgag 14860166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 8122909 - 8123001
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||||||||||||||||||||||||||||||  ||||  ||  | | ||| ||| ||||||||||||||||||| |||| | |||||||||||    
T  8122909 ttcaccctcaaggtatgattcacttttcacaacgctttcgacatagt-tttttcaatttcattactgacttgagcgttggagtgctaacgtgcc 8123001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 431310 - 431384
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||| |  ||||||||||||||  |||||  || ||||||||||||||| ||||| ||||||||||    
T  431310 ttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgagc 431384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 2311828 - 2311882
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctca 356  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| || |||||||||    
T  2311828 ttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctca 2311882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 17485618 - 17485711
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||  ||||| ||| ||||| | | | ||| ||||| |||||| || |||||||||||||||| |||||| ||||| |||||    
T  17485618 ttcaccctcaaggtactattcattttacacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgcc 17485711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 20622505 - 20622429
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactt--tgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||||||||||||||||||||||  ||||  | ||| |||| ||||||  | |||||||||||||||||    
T  20622505 ttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctctatctcattactgacttgagc 20622429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 1770903 - 1770848
Alignment:
Q  321 tcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||| ||||| ||| ||||||| ||||||| ||||||| ||||||||    
T  1770903 tcacttttcacaacactttctacacactcttcctcagttccattactaacttgagc 1770848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 12516282 - 12516191
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtg 393  Q
    |||||||||||||||    ||||||||||||| ||||  ||| || |||||||||||| ||||||| |||||||| | || | |||||||||    
T  12516282 ttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtg 12516191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 28715595 - 28715655
Alignment:
Q  413 gaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctca 473  Q
    ||||||| || | |||||||||||||||| ||| |||||  ||||||||||||| ||||||    
T  28715595 gaagactcattgccacaataccggaacactttccgccacttttgcctctcatccatcctca 28715655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 395
Target Start/End: Original strand, 9135285 - 9135448
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    |||||||||||||||  || |||| ||||| ||||| |||  |  |||| |||||||||| ||| || | ||||||||||||||||||||||||||||||    
T  9135285 tccctaatcacacgctacataacccggagacggttatgaccaatacgtgtctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcac 9135384  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    || | ||| ||| |||||||||||| || |||||||||||||||| || | | |||||||||||    
T  9135385 aacagtttttacacactctttctcaattccattactgacttgagcgttagagtgctaacgtgcc 9135448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 213 - 395
Target Start/End: Original strand, 26762816 - 26762998
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctca 311  Q
    |||| ||||| |||||||| |||||||||||||||| ||||||| |||| ||||||    || | || ||||||||| || || | | | ||||||||||    
T  26762816 tacaagtgtcctctaaccg-tccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctatatatgggtgtccttgcttcaccctca 26762914  T
Q  312 aggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||||||||| ||||| ||| |||| ||| | |||| | |||||||||||||| |||| | |||||||||||    
T  26762915 aggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcc 26762998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 394
Target Start/End: Complemental strand, 5863381 - 5863192
Alignment:
Q  205 gatcactttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagatt 303  Q
    |||||| ||||||||||| |||||||| |||||||||||| ||||  ||||| ||||  |||||    || |||| ||||||| |||| |||| | | |     
T  5863381 gatcacgttacacgtgtcctctaaccg-tccctaatcacatgccgtgaaacccggaggcggttatttccaacgcgcgcctatacaagggtgacattgctc 5863283  T
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgc 394  Q
    ||||||||||||||||||||||||| |||| | ||| ||| |||||||||||||||  ||||||||||||||| || | | ||||||||||    
T  5863282 caccctcaaggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgc 5863192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 39879480 - 39879410
Alignment:
Q  306 ccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||| || ||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  39879480 ccctcatggcatgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagc 39879410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 29373565 - 29373464
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||| ||| |||| | | |||||||||||||||||||||| ||||||||| | ||| ||| |||||||||||| || ||  |||||||||||||||    
T  29373565 gcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctcaattacacaactgacttgagcatt 29373466  T
Q  380 gg 381  Q
    ||    
T  29373465 gg 29373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 13292047 - 13292191
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    ||||||| ||||||||||| |||| ||||| ||||| | |  ||||| |||||||||| | |||  | | |||||||||||||||    |||||||||||    
T  13292047 tccctaaccacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcac 13292146  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    || ||||  ||| |||||||| |||||||||||||||||||||||    
T  13292147 aacacttcttacacactctttttcagtttcattactgacttgagc 13292191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 16203908 - 16203768
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||||||||| ||||||||||||||||||||||||| | ||||  ||||| |||||    | || |  ||||||||||| ||||||   |||||||| ||    
T  16203908 tacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgacttttcttcacccttaa 16203809  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactctttc 353  Q
    |||||| ||||||||||| || ||||| ||| |||||||||    
T  16203808 ggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 487
Target Start/End: Complemental strand, 21161326 - 21161147
Alignment:
Q  314 gtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc-----ac-cttttgtccc 407  Q
    |||||||||||||||||||| ||||| ||| ||| |||||| || | |||||||||||||||| |||| | |||||||||||     || |||| || ||    
T  21161326 gtatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagacactttcgttcc 21161227  T
Q  408 accgcgaagactgatcgacacaataccggaacacattctgccaccgttgcctctcatccgtcctcaccgtacagatcaat 487  Q
    |||||||||||| |||  | |  | || || || ||||||||| | ||||||||||||| ||||||| | ||||||||||    
T  21161226 accgcgaagactcatcttccccgttccagagcatattctgccaacattgcctctcatccatcctcactggacagatcaat 21161147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 7486642 - 7486549
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||| | |||| |||||||||||||||||| || || ||| || |||||||||||| ||||||||| |||||| |||| | |||||||||||    
T  7486642 ttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgcc 7486549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 9867938 - 9868007
Alignment:
Q  307 cctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||||||||||||| |||| ||||| |||  |||||| ||||||| ||||||||||||||||    
T  9867938 cctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagc 9868007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 16204477 - 16204340
Alignment:
Q  213 tacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactcacgcgtgcctatataaggctgacttagattcaccctcaa 312  Q
    |||||||||| |||||||||||||||||||||||||   ||||  ||||| |||||    | || |  ||||||||||| ||| ||   |||||||| ||    
T  16204477 tacacgtgtcctctaaccgctccctaatcacacgccatgaaacacggagacggttatcaacgcgggctcctatataagggtgaattttcttcacccttaa 16204378  T
Q  313 ggtatgattcacttttcacaaaactttgtactcactct 350  Q
    |||||| |||||||||||||| ||||| ||| ||||||    
T  16204377 ggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 10287592 - 10287683
Alignment:
Q  304 caccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||||||||||||   ||||||||||||| ||||  ||| |||| |||||||| | |||||||||||||||| ||  || |||||||||||    
T  10287592 caccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcc 10287683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 395
Target Start/End: Original strand, 43172008 - 43172114
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcatt 379  Q
    |||||||||||| |||  | | ||||||||||| |||||||||||||||||||| |||         | ||||||||||| ||||| |||||||||||||    
T  43172008 gcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact---------cactttctcagttccattattgacttgagcatt 43172098  T
Q  380 ggggagctaacgtgcc 395  Q
    || | |||||||||||    
T  43172099 ggagtgctaacgtgcc 43172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 34854321 - 34854266
Alignment:
Q  321 tcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||| | ||  ||| ||||||||||||||||||||||| ||||||||    
T  34854321 tcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagc 34854266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 16204618 - 16204550
Alignment:
Q  77 tgttatggaccggtcagaagaccaatcctatgttgacatgtggactattcatacaccgtcttaaggctc 145  Q
    |||| ||||||||| | ||||||||||||| ||||||| |||| |||  | ||||||| ||||||||||    
T  16204618 tgttctggaccggttaaaagaccaatcctacgttgacacgtggcctaagcttacaccgccttaaggctc 16204550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 43172950 - 43172986
Alignment:
Q  453 gttgcctctcatccgtcctcaccgtacagatcaatat 489  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  43172950 gttgcctctcatccatcctcaccggacagatcaatat 43172986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 68768 - 68885
Alignment:
Q  274 acgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttg 373  Q
    |||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||||| ||||| ||   |||||||||||||| ||||||| |||||    
T  68768 acgcgtgcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttcta--tactctttctcagttccattactaacttg 68865  T
Q  374 agcattggggagctaacgtg 393  Q
    ||| |||| | |||||||||    
T  68866 agcgttggagtgctaacgtg 68885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 212 - 376
Target Start/End: Original strand, 8485 - 8645
Alignment:
Q  212 ttacacgtgtcttctaaccgctccctaatcacacgccgcaaaacctggagatggttagactca-cgcgtgcctatataaggctgacttagattcaccctc 310  Q
    ||||||||||| |||||||  || ||||||| |||| ||| |||| ||||| |||||  |||| |||| |||||||||||| |||   || ||||||||     
T  8485 ttacacgtgtcatctaacct-tctctaatcaaacgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtga---ag-ttcaccctt 8579  T
Q  311 aaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||||||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||||    
T  8580 aaggtatgattcacttttcacaacactttctacacactgtttttcagtttcattactgacttgagc 8645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 15403 - 15515
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattg 380  Q
    ||||||||||| |||  | | |||||||||||||||||||||||||||||||| ||||| ||   |||||||||||||| ||||||||||| |||| | |    
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccattactgactggagcgtcg 15502  T
Q  381 gggagctaacgtg 393  Q
    | | |||||||||    
T  15503 gagtgctaacgtg 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 120983 - 121081
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcat 378  Q
    |||||||||||| ||| || | |||||||||||||||    ||||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||||    
T  120983 gcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgacttaagcat 121081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 379813 - 379743
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgactt 372  Q
    |||||||||||||||    ||||||||||||| ||||  ||| ||||||||||||||| ||||||||||||    
T  379813 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccattactgactt 379743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 6784 - 6928
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    ||||||||||||||||||| |||||||||| ||||| | |  ||| | ||||||| |||| |||  | | |||||||||||||||    |||||||||||    
T  6784 tccctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttttcac 6883  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    || ||||  ||| ||||| |||||||||||| |||||||||||||    
T  6884 aacacttcttacacactcgttctcagtttcaatactgacttgagc 6928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 6417 - 6321
Alignment:
Q  280 gcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    |||||||||||| |||  | | ||||| ||||||||| || ||||||||||||| ||||| ||| |||| |||||||||| ||||||||||||||||    
T  6417 gcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagc 6321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 7982 - 7889
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    ||||| |||||  ||||||||||||||||||| ||||| ||| |||||||||||| || ||||||||| |||||| || | | |||||||||||    
T  7982 ttcacactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcc 7889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 166 - 311
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggtta-gactcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgat-tcacttttca 330  Q
    ||||||||||||| | ||| |||| |||||  |||| |||  ||||| ||||| |||||| |||  | | |||||||||||||||   | ||||||||||    
T  166 tccctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttca 265  T
Q  331 caaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    ||| ||||  ||| ||||||||||||||| ||||||||||||||||    
T  266 caacacttcttacacactctttctcagttccattactgacttgagc 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 23053 - 22909
Alignment:
Q  233 tccctaatcacacgccgcaaaacctggagatggttag-actcacgcgtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcac 331  Q
    ||||||||||||| ||||| |||||||||| |||||  ||  |||||  |||| |||||| |||  | | |||||||||||||||    |||||||||||    
T  23053 tccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccctcaaggtacacgtcacttttcac 22954  T
Q  332 aaaactttgtactcactctttctcagtttcattactgacttgagc 376  Q
    || ||||  ||| |||  |||||||||| ||||||||||||||||    
T  22953 aacacttcttacacacgatttctcagttccattactgacttgagc 22909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 10909 - 11002
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||||||    ||||||||||||| ||||  ||| |||||| | |||||| ||||| |||||||||| |||| | |||||||||||    
T  10909 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgcc 11002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 215349 - 215276
Alignment:
Q  322 cacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaacgtgcc 395  Q
    |||||||||||| ||||  ||| |||||| | ||||||||||||||||||||||| ||||   |||||||||||    
T  215349 cacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcc 215276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 29286 - 29358
Alignment:
Q  316 atgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagcattggggagctaac 390  Q
    |||||||||||||||||| ||||| |||  |||||| || | ||||||||||||||||||| |||| | ||||||    
T  29286 atgattcacttttcacaacactttctac--actcttccttattttcattactgacttgagcgttggagtgctaac 29358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 149264 - 149217
Alignment:
Q  281 cctatataaggctgacttagattcaccctcaaggtatgattcactttt 328  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||||    
T  149264 cctatataagggtgacttaacttcacccccaaggtatgattcactttt 149217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 35347 - 35277
Alignment:
Q  306 ccctcaaggtatgattcactttt-cacaaaactttgtactcactctttctcagtttcattactgacttgag 375  Q
    ||||||| | ||||||||||||| ||||| |||||  || ||||||||||||||| | |||||||||||||    
T  35347 ccctcaaaggatgattcactttttcacaacactttccacacactctttctcagttccgttactgacttgag 35277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 73796 - 73846
Alignment:
Q  302 ttcaccctcaaggtatgattcacttttcacaaaactttgtactcactcttt 352  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||    
T  73796 ttcaccctgaaggtatgatttacttttcacaacactttctacgcactcttt 73846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 394
Target Start/End: Original strand, 4394 - 4510
Alignment:
Q  278 gtgcctatataaggctgacttagattcaccctcaaggtatgattcacttttcacaaaactttgtactcactctttctcagtttcattactgacttgagca 377  Q
    |||||||||||||| |||  | | |||||||||||||||    ||| |||||| || ||||  ||| | |||| | |||||||||||| ||||||||||     
T  4394 gtgcctatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcattagtgacttgagcg 4493  T
Q  378 ttggggagctaacgtgc 394  Q
    |||| | ||||||||||    
T  4494 ttggagtgctaacgtgc 4510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University