View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5079_high_6 (Length: 377)

Name: NF5079_high_6
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5079_high_6
NF5079_high_6
[»] chr2 (1 HSPs)
chr2 (23-377)||(45146063-45146416)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 377
Target Start/End: Complemental strand, 45146416 - 45146063
Alignment:
Q  23 gactaattagcaactccttgtataaagtattgtgcatctataacagtattcaatggaacatcttaattcagtttataataactctttttgtgacctaact 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45146416 gactaattagcaactccttatataaagtattgtgcatctataagagtattcaatggaacatcttaattcagtttataataactctttttgtgacctaact 45146317  T
Q  123 cttaataaaagcatcaattgtcaagactaaaacacatgagaagagtccggcctaaaagatttatctatcaattagattagagaaccctatgacttaagta 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||    
T  45146316 cttaataaaagcatcaattgtcaagactaaaacacatgagaagagtccggcctaaaagatttatctattaattagattagagaaccctataacttaaata 45146217  T
Q  223 gcacattgaacaattttatttactcaacgcggaacacctaacgttgtactgttgtatatcttcctttgtggtgtgttacttgtgaaatgagagttgaggg 322  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45146216 tcacattgaacaattttatttactcaacgcggaacacctaacgttgtaatgttgtatatcttcctttgtggtgtgttacttgtgaattgagagttgaggg 45146117  T
Q  323 aacaaagatgtgcagcaaaaaatagacatggaatgactttttgactgtattatta 377  Q
    ||||||||||||| |  ||||||| | ||||||||| ||||||| ||||||||||    
T  45146116 aacaaagatgtgccgacaaaaata-aaatggaatgaatttttgaatgtattatta 45146063  T

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