View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_high_7 (Length: 372)
Name: NF5079_high_7
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_high_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 122 - 372
Target Start/End: Original strand, 45145837 - 45146087
Alignment:
| Q |
122 |
cataactaaggaaggagcaattatgtagctaggcttcatcccatttatttggtgagaaattaggatggtccacattttattttgtttttgagaagcaaag |
221 |
Q |
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| T |
45145837 |
cataactaaggaaggagcaattatgtagctaggcttcatcccatttatttggtgagaaattaggatggtccacattttattttgtttttgagaagcaaag |
45145936 |
T |
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| Q |
222 |
tagcttagctatattcgttggtggcattaagaaggtccctccgttttctttttccaacttccttgtcttttgcaaatcttgttcataatcttccttcgat |
321 |
Q |
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| T |
45145937 |
tagcttagctatattcgttggtggcattaagaaggtccctccgttttctttttctaacttccttgtcttttgcaactcttgttcatcatcttccttcaat |
45146036 |
T |
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| Q |
322 |
ttctgtctctttattttggacccaaataataataccttcaaaatttcattc |
372 |
Q |
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| T |
45146037 |
ttctgtctctttattttggacccaaataataatacattcaaaaattcattc |
45146087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 45145731 - 45145785
Alignment:
| Q |
17 |
accaataagataaaatattattctaacaattaaattattagcatcaaatcatttc |
71 |
Q |
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| T |
45145731 |
accaataagataaaatattattctaacaattaaattattagcatcaaatcatttc |
45145785 |
T |
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