View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_10 (Length: 313)
Name: NF5079_low_10
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 13393249 - 13393466
Alignment:
| Q |
18 |
aaagacacactcaactttgtgagtgagtgaaagtgtcatcatgtacacgtgtttgctttgtcataaaactttagcactatctttttcttcatcactcata |
117 |
Q |
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| T |
13393249 |
aaagacacactcaactttgtga----gtgaaagtgtcatcatgtacacgtgtttgctttgtcataaaacattagcactatctttttcttcatcactcata |
13393344 |
T |
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| Q |
118 |
agtcataaacttatggtgctaattaacaatagctcttgtgttacaacttagtattaaatctcaaacagtaggaatctttggcctttaagcaacctttgct |
217 |
Q |
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| T |
13393345 |
agtcataaacttatggtgctaattaacaatagctcttgtgttacaacttagtataaaatctcaaacagtaggaatctttggcctttaagcaacctttgct |
13393444 |
T |
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| Q |
218 |
ccaagcaattctagaatagaac |
239 |
Q |
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| T |
13393445 |
ccaagcaattctagaatagaac |
13393466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 13396266 - 13396333
Alignment:
| Q |
58 |
atgtacacgtgtttgctttgtcataaaactttagcactatctttttcttcatcactcataagtcataa |
125 |
Q |
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| T |
13396266 |
atgtaaacgtatttgctttgtcataaaacattggcactatctttttcttcatcactcataagtcataa |
13396333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 13396349 - 13396453
Alignment:
| Q |
127 |
cttatggtgctaattaacaatagctcttgtgttacaacttagtattaaatctcaaacagtaggaatctttggcctttaagcaacctttgctccaagcaat |
226 |
Q |
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| T |
13396349 |
cttatggtgctaattaacaatatcccttgtggtattcct-agtatagattttcacacggttggaatctttggcctt-aagcaacctttgctccaagcaat |
13396446 |
T |
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| Q |
227 |
tctagaa |
233 |
Q |
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| T |
13396447 |
tcaagaa |
13396453 |
T |
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