View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_11 (Length: 297)
Name: NF5079_low_11
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 51641460 - 51641717
Alignment:
| Q |
7 |
gataatactaaagtcagtatcaaatcaaaacatgttacatcatctagagattaaaaagtgaagactaaaattagagagtaaaattgcaaaatttaacaat |
106 |
Q |
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| T |
51641460 |
gataatactatagtc-gtatcaaatcaaaacatgttccatcatctagagattaaaaagtgaagactaaaattagagagtaaaattgcaaaatttaacaat |
51641558 |
T |
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| Q |
107 |
gnnnnnnnnnnncttttgaagaccagtatcaaaactaaggaattattgtttgacaatgttgattaaaataatgttcctaacactttcatgtaacgcttcc |
206 |
Q |
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| T |
51641559 |
g--------------ttgaagaccagtatcaaaactaaggaattattgtttgacaatgttgattaaaataatgttcctaacactttcatgtaacgattcc |
51641644 |
T |
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| Q |
207 |
ttccctaattaattaactaatggggagtactttaaacaaacccgcggttgagacaacagtattgagtcgaata |
279 |
Q |
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| T |
51641645 |
ttccctaattaattaactaatggggagtactttaaacaaacccgcggttgagacaacagtattgagtcgaata |
51641717 |
T |
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