View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_12 (Length: 292)
Name: NF5079_low_12
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 134 - 277
Target Start/End: Complemental strand, 29351883 - 29351740
Alignment:
| Q |
134 |
tgtagtgtatgctttctatagattctaacatttgcgccgtgttcgattttgctagaatattctcttttcatactcacaagttccatgaacattgatcatt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29351883 |
tgtagtgtatgctttctatagattctaacatttgcgccgtgttcgattttgctagaatattctcttttcatactcacaagttccatgaacattgatcatt |
29351784 |
T |
|
| Q |
234 |
tgatcttcatttctatgtaatggaccattctaaacgattttcat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29351783 |
tgatcttcatttctatgtaatggaccattctaaacgattttcat |
29351740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 34327282 - 34327382
Alignment:
| Q |
177 |
cgattttgctagaatattctcttttcatactcacaagttccatgaacattgatcatttgatcttcatttctatgtaatggaccattctaaacgattttca |
276 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |
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| T |
34327282 |
cgattttgctagaatattctcttttcatactaacaagttccatgaacattgatcatttgttcttcacttctatgtaatggacgattctaaacgattttca |
34327381 |
T |
|
| Q |
277 |
t |
277 |
Q |
| |
|
| |
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|
| T |
34327382 |
t |
34327382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 34325515 - 34325625
Alignment:
| Q |
1 |
gcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaactcgatcactcattagttggttttcttgttctcaactaagagatttacgattctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34325515 |
gcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaagagatttatgattctg |
34325614 |
T |
|
| Q |
101 |
ttttattaggat |
112 |
Q |
| |
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||||||||||| |
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| T |
34325615 |
-tttattaggat |
34325625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 29352302 - 29352192
Alignment:
| Q |
1 |
gcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaactcgatcactcattagttggttttcttgttctcaactaagagatttacgattctg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||| | || || ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29352302 |
gcaccatcaaatagaataatttacaagaaagagtggtttgacaaatccaataacagattagttggttttcttgttctaaactaagagatttacgattctg |
29352203 |
T |
|
| Q |
101 |
ttttattaggat |
112 |
Q |
| |
|
||||||||||| |
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| T |
29352202 |
-tttattaggat |
29352192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 34327174 - 34327234
Alignment:
| Q |
109 |
ggatatgttgattttgtcaatgccatgtagtgtatgctttctatagattctaacatttgcg |
169 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34327174 |
ggatatgttgattttgtccatgacatgtagtgtatgctttctatagattctaacatttgcg |
34327234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 109 - 277
Target Start/End: Original strand, 30251117 - 30251284
Alignment:
| Q |
109 |
ggatatgttgattttgtcaatgccatgtagtgtatgctttctatagattctaacatttgcgccgtgttcgattttgctagaatattctcttttcatactc |
208 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| || |
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| T |
30251117 |
ggatatgttgattttgtccatgacatgtagtgtatgctttctatagattctaacatttgcatcgtgttcgattttgctacaatattctctttccat-ttc |
30251215 |
T |
|
| Q |
209 |
acaagttccatgaacattgatcatttgatcttcatttctatgtaatggaccattctaaacgattttcat |
277 |
Q |
| |
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| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||| |
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| T |
30251216 |
aaaagttccatgaacattgatcatttgttcttcgcttctatgtgatggaccattctaaacgattctcat |
30251284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 30250014 - 30250104
Alignment:
| Q |
2 |
caccatcaaatagaataatttacaagaaaaagtggtttgtcaaactcgatcactcattagttggttttcttgttctcaactaagagattta |
92 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || || | |||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
30250014 |
caccatcaaatagaataacttacaagaaaaagtggtttatcgaattggatcacacattagttggttttcttgttttcaactaagagattta |
30250104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 4029389 - 4029489
Alignment:
| Q |
177 |
cgattttgctagaatattctcttttcatactcacaagttccatgaacattgatcatttgatcttcatttctatgtaatggaccattctaaacgattttca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |
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| T |
4029389 |
cgattttgctagaatattctcttttcatactcacaagtcccatgaacattgatcatttgttcttcacttctatgtaatggacgattctaaacgattttca |
4029488 |
T |
|
| Q |
277 |
t |
277 |
Q |
| |
|
| |
|
|
| T |
4029489 |
t |
4029489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4028108 - 4028218
Alignment:
| Q |
1 |
gcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaactcgatcactcattagttggttttcttgttctcaactaagagatttacgattctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4028108 |
gcaccatcaaatagaataatttacaagaaaaagtggtttgtcaattccagtaaatcattagttggttttcttgttctcaactaagagatttatgattctg |
4028207 |
T |
|
| Q |
101 |
ttttattaggat |
112 |
Q |
| |
|
||||||||||| |
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|
| T |
4028208 |
-tttattaggat |
4028218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 4029276 - 4029332
Alignment:
| Q |
112 |
tatgttgattttgtcaatgccatgtagtgtatgctttctatagattctaacatttgc |
168 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4029276 |
tatgttgattttgtccatgacatgtagtgtatgctttctatagattctaacatttgc |
4029332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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