View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5079_low_13 (Length: 269)

Name: NF5079_low_13
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5079_low_13
NF5079_low_13
[»] chr7 (11 HSPs)
chr7 (1-145)||(11572189-11572333)
chr7 (1-235)||(23125919-23126154)
chr7 (33-236)||(11015950-11016156)
chr7 (33-145)||(2501041-2501147)
chr7 (86-145)||(15871117-15871176)
chr7 (93-146)||(18361610-18361663)
chr7 (203-243)||(1878379-1878419)
chr7 (179-234)||(25807370-25807425)
chr7 (94-207)||(14114050-14114166)
chr7 (94-207)||(14423700-14423816)
chr7 (74-102)||(4549784-4549812)
[»] chr1 (8 HSPs)
chr1 (40-236)||(2819221-2819412)
chr1 (34-142)||(31359394-31359496)
chr1 (188-234)||(10154013-10154060)
chr1 (205-258)||(8698817-8698870)
chr1 (90-145)||(21683138-21683193)
chr1 (2-45)||(31359502-31359545)
chr1 (188-236)||(25399361-25399410)
chr1 (202-234)||(10154114-10154146)
[»] chr3 (7 HSPs)
chr3 (45-145)||(2903166-2903266)
chr3 (74-145)||(16305169-16305240)
chr3 (193-257)||(2903308-2903372)
chr3 (90-145)||(16882368-16882423)
chr3 (96-146)||(13653994-13654044)
chr3 (90-139)||(3087622-3087671)
chr3 (1-64)||(11514000-11514061)
[»] scaffold0092 (2 HSPs)
scaffold0092 (1-145)||(8165-8306)
scaffold0092 (188-233)||(8074-8119)
[»] chr5 (3 HSPs)
chr5 (74-145)||(27276137-27276208)
chr5 (90-145)||(31589022-31589077)
chr5 (75-145)||(20237377-20237447)
[»] chr6 (6 HSPs)
chr6 (74-236)||(14758292-14758456)
chr6 (8-207)||(15477722-15477925)
chr6 (90-145)||(18026779-18026834)
chr6 (42-105)||(20462036-20462099)
chr6 (90-145)||(31127355-31127410)
chr6 (203-236)||(15541990-15542023)
[»] chr2 (6 HSPs)
chr2 (34-142)||(33705924-33706032)
chr2 (90-145)||(19320378-19320433)
chr2 (90-145)||(24440702-24440757)
chr2 (1-183)||(22683465-22683649)
chr2 (86-145)||(27640208-27640267)
chr2 (74-145)||(19643638-19643711)
[»] chr4 (7 HSPs)
chr4 (33-145)||(17526338-17526444)
chr4 (74-145)||(17812261-17812332)
chr4 (72-145)||(20577359-20577432)
chr4 (90-145)||(13027853-13027908)
chr4 (93-145)||(16324502-16324554)
chr4 (93-145)||(20570985-20571037)
chr4 (203-243)||(24619628-24619668)
[»] scaffold0388 (1 HSPs)
scaffold0388 (39-145)||(5458-5565)
[»] chr8 (3 HSPs)
chr8 (33-142)||(27739945-27740055)
chr8 (153-236)||(17687963-17688046)
chr8 (74-145)||(19505448-19505519)
[»] scaffold0351 (1 HSPs)
scaffold0351 (90-145)||(9231-9286)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-145)||(112284-112339)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 11572189 - 11572333
Alignment:
Q  1 cagaagttgactgtcagagtatgaagatcacccagaggctgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaa 100  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||||||||    
T  11572189 cagaagctgactgtcagagtatgaagatcacctagagtctgaagtgaagaacctgaagttagttaaacggatttttgaagacacaaatgtgcagaaggaa 11572288  T
Q  101 tagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  11572289 tagaagactgaagcaacagatatttcagaggaattagaaggcatt 11572333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 23126154 - 23125919
Alignment:
Q  1 cagaagttgactgtcagagtatgaagatcacccagaggctgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaa 100  Q
    |||||| ||| ||||||||| ||||| ||||| |||| |  |||||||||||||||| ||||  |||   || |||||||||| |  |||||||||||||    
T  23126154 cagaagctgattgtcagagtctgaag-tcacc-agagtcctaagtgaagaacctgaagttagcaaaatggatatttgaagacacacgtgtgcagaaggaa 23126057  T
Q  101 tagaagactgaaacaacagatatttcagaggaattagaaggcattaattgca---ccacagagaaaggacagtagaagaacaatagcacgattgcacaat 197  Q
    ||||||||||||  ||  | ||||| ||||||||| ||||| ||||  |||    |||  |||||||| |||| |||| ||||||| || |||| |||||    
T  23126056 tagaagactgaagtaattgttatttgagaggaattggaaggtattagatgcttatccatggagaaagggcagtggaaggacaatagtacaattgtacaat 23125957  T
Q  198 cactactccactactccaacatttcatgcgcatagtac 235  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  23125956 cactactccattactccaacatttcattcgcatagtac 23125919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 11016156 - 11015950
Alignment:
Q  33 cagaggctgaagtgaagaacctgaaattagttaa-acaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagagg 131  Q
    |||| |||||||||||||||||||| |||||||  | | || |||||||||| |||| ||||||||||||||||||||| | |||  |||| ||| || |    
T  11016156 cagaagctgaagtgaagaacctgaagttagttattatagatatttgaagacacaaatatgcagaaggaatagaagactggagcaatggata-ttccgaag 11016058  T
Q  132 aattagaaggcattaattgc---accacagagaaaggacagtagaagaacaatagcacgattgcacaatcacta-ctccactactccaacatttcatgcg 227  Q
    |||||||||||||| | |||    |||||||||||||||| | |||  ||||||| |  |||| |||| ||||| |||| ||||||||||||||| |||     
T  11016057 aattagaaggcattgaatgcttatccacagagaaaggacaat-gaaagacaatagtataattgtacaaccactacctcccctactccaacatttcttgca 11015959  T
Q  228 catagtaca 236  Q
    |||||||||    
T  11015958 catagtaca 11015950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 2501041 - 2501147
Alignment:
Q  33 cagaggctgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagagga 132  Q
    ||||| ||||||||||||||||||| |||||||      ||||| |||||| |||| || |||||||||||||||||| | ||||  ||||||| || ||    
T  2501041 cagagtctgaagtgaagaacctgaagttagtta------ttttttaagacacaaatatgtagaaggaatagaagactggagcaacgaatatttctgaaga 2501134  T
Q  133 attagaaggcatt 145  Q
    |||||||||||||    
T  2501135 attagaaggcatt 2501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 15871117 - 15871176
Alignment:
Q  86 aatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||||||||||||||| | ||||| || |||| || |||||||||||||||    
T  15871117 aatgtgcagaaggaatagaagactggagcaacaaatttttctgaagaattagaaggcatt 15871176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 18361610 - 18361663
Alignment:
Q  93 agaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatta 146  Q
    ||||||||||||||  |||| |||||  ||||||||||||||||||||||||||    
T  18361610 agaaggaatagaagcttgaagcaacaactatttcagaggaattagaaggcatta 18361663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 1878379 - 1878419
Alignment:
Q  203 ctccactactccaacatttcatgcgcatagtacacgttaca 243  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  1878379 ctccactactccaacatttcatgcgcatagtaaaagttaca 1878419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 25807425 - 25807370
Alignment:
Q  179 aatagcacgattgcacaatcactactccactactccaacatttcatgcgcatagta 234  Q
    ||||| || |||| |||| ||||||||||||||||||||||||| || ||||||||    
T  25807425 aatagtacaattgtacaaccactactccactactccaacatttcctgagcatagta 25807370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 14114166 - 14114050
Alignment:
Q  94 gaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcattaattgc---accacagagaaaggacagtagaagaacaatagcacgatt 190  Q
    ||||||||||||||||| | ||| |  ||||||||| ||||||||||||||||  |||    |||||||||||||||||  |||| || |||  || |||    
T  14114166 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccacagagaaaggacaggggaaggactataatacaatt 14114067  T
Q  191 gcacaatcactactcca 207  Q
    | |||| ||||||||||    
T  14114066 gtacaaccactactcca 14114050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 14423816 - 14423700
Alignment:
Q  94 gaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcattaattgc---accacagagaaaggacagtagaagaacaatagcacgatt 190  Q
    ||||||||||||||||| | ||| |  ||||||||| ||||||||||||||||  |||    |||||||||||||||||  |||| || |||  || |||    
T  14423816 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccacagagaaaggacaggggaaggactataatacaatt 14423717  T
Q  191 gcacaatcactactcca 207  Q
    | |||| ||||||||||    
T  14423716 gtacaaccactactcca 14423700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 4549812 - 4549784
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaata 102  Q
    |||||||||||||||||||||||||||||    
T  4549812 tttgaagacataaatgtgcagaaggaata 4549784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 2819221 - 2819412
Alignment:
Q  40 tgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaa 139  Q
    |||| ||||||||||||| |||||||||  ||| ||||| |||| ||  ||| |||| ||||||||||||| | |||| | |||||||||||||||||||    
T  2819221 tgaaatgaagaacctgaagttagttaaatgaatatttgatgacacaagagtgaagaatgaatagaagactggagcaacggctatttcagaggaattagaa 2819320  T
Q  140 ggcattaattgc---accacagagaaaggacagtagaagaacaatagcacgattgcacaatcactactccactactccaacatttcatgcgcatagtaca 236  Q
    |||||||  |||     ||||||||| ||||||| ||||||||        |||| |||  || ||||||||||||||||||||||||||||||| ||||    
T  2819321 ggcattagatgcttatacacagagaatggacagtggaagaaca--------attgtacagccattactccactactccaacatttcatgcgcatattaca 2819412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 31359496 - 31359394
Alignment:
Q  34 agaggctgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaa 133  Q
    |||| ||||||||||||||||||| |||||||      || || |||||| |||| ||||||||||||||||||||||  ||||| ||||||| || |||    
T  31359496 agagtctgaagtgaagaacctgaagttagtta------ttcttaaagacacaaatatgcagaaggaatagaagactgatgcaacaaatatttctgaagaa 31359403  T
Q  134 ttagaaggc 142  Q
    |||||||||    
T  31359402 ttagaaggc 31359394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 10154060 - 10154013
Alignment:
Q  188 attgcacaatcactac-tccactactccaacatttcatgcgcatagta 234  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  10154060 attgtacaatcactacctccactactccaacatttcatgcgcatagta 10154013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 8698870 - 8698817
Alignment:
Q  205 ccactactccaacatttcatgcgcatagtacacgttacatctctgtctctgctc 258  Q
    |||||||||||||||||||||| ||||||||| | |||| || |||||||||||    
T  8698870 ccactactccaacatttcatgcacatagtacaagctacaactgtgtctctgctc 8698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 21683138 - 21683193
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||||||| ||||| ||||   ||||||| |||||||||||||||||    
T  21683138 tgcagaaggaatagaagtctgaagcaacgactatttcaaaggaattagaaggcatt 21683193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 31359545 - 31359502
Alignment:
Q  2 agaagttgactgtcagagtatgaagatcacccagaggctgaagt 45  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  31359545 agaagctgactgtcagagtctgaagatcacccagagtctgaagt 31359502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 25399410 - 25399361
Alignment:
Q  188 attgcacaatcactac-tccactactccaacatttcatgcgcatagtaca 236  Q
    |||| ||||||||||| ||||||||||||||||||| ||| |||||||||    
T  25399410 attgtacaatcactacctccactactccaacatttcctgcacatagtaca 25399361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 10154146 - 10154114
Alignment:
Q  202 actccactactccaacatttcatgcgcatagta 234  Q
    |||||||||||||||||||||||| ||||||||    
T  10154146 actccactactccaacatttcatgtgcatagta 10154114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 2903166 - 2903266
Alignment:
Q  45 tgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcat 144  Q
    |||||||  |||| |||||||||   || |||||||||| |||||| ||||||||||||||||||||  ||||| ||||||| || ||||||||||||||    
T  2903166 tgaagaatttgaagttagttaaatggatgtttgaagacacaaatgtacagaaggaatagaagactgatgcaacaaatatttctgaagaattagaaggcat 2903265  T
Q  145 t 145  Q
    |    
T  2903266 t 2903266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 16305169 - 16305240
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||   |||||||||||||| |||||||||||    
T  16305169 tttgaagacataagtttgcagaaggaatagaagcctgaagcaatgaatatttcagaggaaatagaaggcatt 16305240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 2903308 - 2903372
Alignment:
Q  193 acaatcactactccactactccaacatttcatgcgcatagtacacgttacatctctgtctctgct 257  Q
    |||| |||||||| |||||||||||||||||||||||||||||| | ||||  | ||||||||||    
T  2903308 acaaccactactcaactactccaacatttcatgcgcatagtacaagctacagttgtgtctctgct 2903372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 16882423 - 16882368
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||| |||| ||| |||||||| |||||||||||||||| ||||||||    
T  16882423 tgcagaaggaatggaagcctgcaacaacagctatttcagaggaattaaaaggcatt 16882368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 13654044 - 13653994
Alignment:
Q  96 aggaatagaagactgaaacaacagatatttcagaggaattagaaggcatta 146  Q
    ||||||||||| ||| | |||||  ||||||||||||||||||||||||||    
T  13654044 aggaatagaagcctggagcaacaactatttcagaggaattagaaggcatta 13653994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 3087671 - 3087622
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaa 139  Q
    ||||||||||||||||| ||||| |||||  | |||||||||||||||||    
T  3087671 tgcagaaggaatagaagcctgaagcaacaactctttcagaggaattagaa 3087622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11514061 - 11514000
Alignment:
Q  1 cagaagttgactgtcagagtatgaagatcacccagaggctgaagtgaagaacctgaaattagtt 64  Q
    |||||||||||||| ||||| |||||  |  |||||| ||||||||||||||||||| ||||||    
T  11514061 cagaagttgactgttagagtctgaag--ccaccagagtctgaagtgaagaacctgaagttagtt 11514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 8306 - 8165
Alignment:
Q  1 cagaagttgactgtcagagtatgaagatcacccagaggctgaagtgaagaacctgaaattagttaaacaaatt-tttgaagacataaatgtgcagaagga 99  Q
    |||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||     || |||||||||| || | ||||||||||    
T  8306 cagaagctgacagtcagagtatgaag-tcacctagagtctgaagtgaagaacctaaaattagttaagtttgttatttgaagacacaagtttgcagaagga 8208  T
Q  100 atagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||   || ||||| ||||   |||||||||||||||||||||||||    
T  8207 at---agtctgaagcaacgattatttcagaggaattagaaggcatt 8165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 8119 - 8074
Alignment:
Q  188 attgcacaatcactactccactactccaacatttcatgcgcatagt 233  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  8119 attgtacaaccactactccactactccaacatttcatgcgcatagt 8074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 27276137 - 27276208
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||  | |||||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  27276137 tttgaagacatatgtatgcagaaggaatagaagcgtgaaacaacaattatttcagaggaattagaaggcatt 27276208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 31589022 - 31589077
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||||||| ||| | |||||| || ||||||||||||| ||||||||    
T  31589022 tgcagaaggaatagaagcctggagcaacagctaattcagaggaattaaaaggcatt 31589077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 20237377 - 20237447
Alignment:
Q  75 ttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||| | |||| |||||||||||| ||  | ||||   |||||||||||||||||||||||||    
T  20237377 ttgaagacataagtttgcaaaaggaatagaagccttgagcaacgactatttcagaggaattagaaggcatt 20237447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 14758456 - 14758292
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcattaattgca---ccacagagaaaggacagt 170  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||  ||||| | || |||||| |||||  |   |||    ||| ||||||||||||||    
T  14758456 tttgaagacacaaatatgcagaaggaataaaagactgaaacaacgaatatt-ctgatgaattaaaaggctatggatgcttatccaaagagaaaggacagt 14758358  T
Q  171 agaagaacaatagcacgattgcacaatcactac-tccactactccaacatttcatgcgcatagtaca 236  Q
     |||| | ||||  || |||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  14758357 -gaaggataataatacaattgtacaaccactacctccactactccaacatttcatgcgcatagtaca 14758292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 15477722 - 15477925
Alignment:
Q  8 tgactgtcagagtatgaagatcacccagaggctgaagtgaagaacctgaaattagttaaac--aaatttttgaagacataaatgtgcagaaggaat-aga 104  Q
    ||||||||||||| ||||| ||| | |||| ||||| |||||||| |||| ||| |||||   | || |||||||||| |||  |||||||||||| |||    
T  15477722 tgactgtcagagtctgaagttcatc-agagtctgaaatgaagaacttgaagttatttaaatggatatatttgaagacacaaacatgcagaaggaataaga 15477820  T
Q  105 agactgaaacaacagatatttcagaggaattagaaggcattaattgc---accacagagaaaggacagtagaagaacaatagcacgattgcacaatcact 201  Q
    ||| |||  |||||  |||||| || |||||||||||||||   |||    ||| |||||||||||| | |||||||||||| || |||| |||| ||||    
T  15477821 agattgatgcaacaattatttctgatgaattagaaggcattggctgcttatccaaagagaaaggacact-gaagaacaatagtacaattgtacaagcact 15477919  T
Q  202 actcca 207  Q
    ||||||    
T  15477920 actcca 15477925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 18026779 - 18026834
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||| |||||| ||| | |||||  |||||||||||||||||||||||||    
T  18026779 tgcagaaggagtagaagcctggagcaacaactatttcagaggaattagaaggcatt 18026834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 20462099 - 20462036
Alignment:
Q  42 aagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaa 105  Q
    |||||||||||||||| ||||  |||   ||||||||||||| || ||||||||||||||||||    
T  20462099 aagtgaagaacctgaagttagcaaaattgatttttgaagacacaagtgtgcagaaggaatagaa 20462036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 31127355 - 31127410
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||| |||||||||||| ||| ||||||  ||||||||||||||||| ||||||||    
T  31127355 tgcaaaaggaatagaagcctggaacaacgtatatttcagaggaattataaggcatt 31127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 15542023 - 15541990
Alignment:
Q  203 ctccactactccaacatttcatgcgcatagtaca 236  Q
    |||||| |||||||||||||||||||||||||||    
T  15542023 ctccacaactccaacatttcatgcgcatagtaca 15541990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 33705924 - 33706032
Alignment:
Q  34 agaggctgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaa 133  Q
    |||| ||||||||||||||||||| | |||||||    | |||||||||| |  ||||||||| ||||||||||||||| ||||   |||||||||| ||    
T  33705924 agagtctgaagtgaagaacctgaagtaagttaaatgggtatttgaagacacaggtgtgcagaatgaatagaagactgaagcaacgactatttcagagaaa 33706023  T
Q  134 ttagaaggc 142  Q
    |||||||||    
T  33706024 ttagaaggc 33706032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 19320378 - 19320433
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||||||| ||  | |||||| |||||||||||||||||||||||||    
T  19320378 tgcagaaggaatagaaggctagagcaacagctatttcagaggaattagaaggcatt 19320433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 24440702 - 24440757
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||||||| ||| | |||| | |||||||||||||||||||||||||    
T  24440702 tgcagaaggaatagaagcctggagcaactgctatttcagaggaattagaaggcatt 24440757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 22683649 - 22683465
Alignment:
Q  1 cagaagttgactgtcagagtatgaagatcacccagaggctgaagtgaagaacctgaaattagttaaacaaatt-tttgaagacataaatgtgcagaagga 99  Q
    |||||||||||| ||||| ||||||| ||||| |||| ||||||||||||||||||| | | |||||    || |||||||||| || |||| |||||||    
T  22683649 cagaagttgactatcagaatatgaag-tcacc-agagtctgaagtgaagaacctgaagtcatttaaattggttatttgaagacacaagtgtgtagaagga 22683552  T
Q  100 atagaagactgaaacaacagatatttcagaggaattagaaggcattaattgc---accacagagaaaggacagtagaagaacaatag 183  Q
    ||| || |||  | ||||   ||||||| ||||| ||||||||||| | |||    ||| |||||||||||||| |||| |||||||    
T  22683551 atataaaactagagcaacgactatttcaaaggaaatagaaggcattgaatgcttatccaaagagaaaggacagtggaaggacaatag 22683465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 27640208 - 27640267
Alignment:
Q  86 aatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||||||||||||||||||||||   ||||||  || || ||||||||||||    
T  27640208 aatgtgcagaaggaatagaagactgaaacaaggaatatttttgaagagttagaaggcatt 27640267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 19643638 - 19643711
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaatagaagactgaa--acaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||| || ||||||||||||||| ||||||| |  | ||||  ||||| |||||||||||||||||||    
T  19643638 tttgaagacacaagtgtgcagaaggaatataagactggagcaaaacaactattttagaggaattagaaggcatt 19643711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 17526338 - 17526444
Alignment:
Q  33 cagaggctgaagtgaagaacctgaaattagttaaacaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagagga 132  Q
    ||||| ||||||||||||||||||| |||||||      || || |||||| |||| ||||||||||||||||||||||   |||| ||||||  || ||    
T  17526338 cagagtctgaagtgaagaacctgaagttagtta------ttctttaagacacaaatatgcagaaggaatagaagactgatggaacaaatatttttgaaga 17526431  T
Q  133 attagaaggcatt 145  Q
    |||||||||||||    
T  17526432 attagaaggcatt 17526444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 17812261 - 17812332
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||| |||| |||||||| ||||||||  || | |||| | |||||||||||||||||||||||||    
T  17812261 tttgaagacacaaatttgcagaagaaatagaagtttggagcaacggctatttcagaggaattagaaggcatt 17812332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 20577432 - 20577359
Alignment:
Q  72 tttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||| || | |||||||| |||||||| ||||| |||  | |||||||||| ||||||||||||||    
T  20577432 tttttgaagacacaagtctgcagaagaaatagaagcctgaagcaatggctatttcagagaaattagaaggcatt 20577359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 13027908 - 13027853
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||| |||| ||| | |||| | |||||||||||||||||||||||||    
T  13027908 tgcagaaggaatggaagcctggagcaacggctatttcagaggaattagaaggcatt 13027853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 16324502 - 16324554
Alignment:
Q  93 agaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||| | |||| ||||||||||   |||||||||||||||||||||||||    
T  16324502 agaaggatttgaagcctgaaacaacgactatttcagaggaattagaaggcatt 16324554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 20570985 - 20571037
Alignment:
Q  93 agaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||||||| ||| | ||||   |||||||||||||||||||||||||    
T  20570985 agaaggaatagaagtctggagcaacgactatttcagaggaattagaaggcatt 20571037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 24619668 - 24619628
Alignment:
Q  203 ctccactactccaacatttcatgcgcatagtacacgttaca 243  Q
    |||||||||||||||||||| ||||| ||||||| ||||||    
T  24619668 ctccactactccaacatttcctgcgcgtagtacaagttaca 24619628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 5565 - 5458
Alignment:
Q  39 ctgaagtgaagaacctgaaattagttaaacaaatt-tttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattag 137  Q
    ||||||||||||||||| ||||||||| |   ||| |||||||||| || | |||||| |||||||||| ||| | |||| | || |||||||||||| |    
T  5565 ctgaagtgaagaacctggaattagttatatttattatttgaagacacaagtttgcagatggaatagaagcctggagcaacggctaattcagaggaatttg 5466  T
Q  138 aaggcatt 145  Q
    ||||||||    
T  5465 aaggcatt 5458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 27740055 - 27739945
Alignment:
Q  33 cagaggctgaagtgaagaacctgaaattagttaa-acaaatttttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagagg 131  Q
    |||| |||||| ||||||||||||| |||||||  |   || |||||||||| |||| ||||||||||||| |||| || | |||| |||||||| || |    
T  27740055 cagaagctgaaatgaagaacctgaagttagttattatggatatttgaagacacaaatatgcagaaggaataaaagattggatcaacggatatttctgaag 27739956  T
Q  132 aattagaaggc 142  Q
    |||||||||||    
T  27739955 aattagaaggc 27739945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 17688046 - 17687963
Alignment:
Q  153 ccacagagaaaggacagtagaagaacaatagcacgattgcacaatcactac-tccactactccaacatttcatgcgcatagtaca 236  Q
    ||||| |||||||||| | |||| ||||||| || |||| |||| |||||| ||||||||||||||||||| |||||||| ||||    
T  17688046 ccacaaagaaaggacaat-gaaggacaatagtacaattgtacaaccactacctccactactccaacatttcctgcgcatattaca 17687963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 19505448 - 19505519
Alignment:
Q  74 tttgaagacataaatgtgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    |||||||||| || | ||||||||||||||||  ||  | |||| | |||||||||||||||||||||||||    
T  19505448 tttgaagacacaagtttgcagaaggaatagaatcctcgagcaacggctatttcagaggaattagaaggcatt 19505519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 9231 - 9286
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||| ||| || || |||| |||||||| ||||||||||||||||||    
T  9231 tgcagaaggaataaaagcctaaagcaacggatatttctgaggaattagaaggcatt 9286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 112339 - 112284
Alignment:
Q  90 tgcagaaggaatagaagactgaaacaacagatatttcagaggaattagaaggcatt 145  Q
    ||||||||||||| ||| || || |||| |||||||| ||||||||||||||||||    
T  112339 tgcagaaggaataaaagcctaaagcaacggatatttctgaggaattagaaggcatt 112284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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