View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_15 (Length: 239)
Name: NF5079_low_15
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 14597707 - 14597925
Alignment:
| Q |
18 |
cttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagct |
117 |
Q |
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| T |
14597707 |
cttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctcgaactagtgcattcatggcaccagct |
14597806 |
T |
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| Q |
118 |
ttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatgatcttgtcgtctg |
217 |
Q |
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| T |
14597807 |
ttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatgatcttgtcgtctt |
14597906 |
T |
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| Q |
218 |
cacttcccattaatggatc |
236 |
Q |
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| T |
14597907 |
cacttcccattaacggatc |
14597925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 14610794 - 14610580
Alignment:
| Q |
22 |
caattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttct |
121 |
Q |
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| T |
14610794 |
caattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgataggactgcagatgctcgaacaagtgcattcatggcaccggctttct |
14610695 |
T |
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| Q |
122 |
tgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatgatcttgtcgtctgcact |
221 |
Q |
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| T |
14610694 |
tgttatgatcataacctggcctcttctctcgagatacataaaccaacatcggcaaacgtgtatctacgtcactgaaatcaatgatgttgttgtttgcact |
14610595 |
T |
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| Q |
222 |
tcccattaatggatc |
236 |
Q |
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| T |
14610594 |
tcgcgttaatggatc |
14610580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 44634291 - 44634158
Alignment:
| Q |
28 |
tagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgt |
127 |
Q |
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| T |
44634291 |
tagatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttcttgttgt |
44634192 |
T |
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| Q |
128 |
gatcataacctggcctcttctctcgagatacata |
161 |
Q |
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| T |
44634191 |
gatcatatcccggcctcttctcacgagacacata |
44634158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 29918134 - 29918207
Alignment:
| Q |
88 |
gctctaactaatgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
161 |
Q |
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| T |
29918134 |
gctctaaccaatgcattcatggccccagcttttttgttgtgatcgtaacctggacgtttctctctagaaacata |
29918207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 54383191 - 54383252
Alignment:
| Q |
100 |
gcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
161 |
Q |
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|||||||||||||| |||||||||| ||| | | | |||||||| ||||||| ||||||||| |
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| T |
54383191 |
gcattcatggcaccggctttcttgtggtgttgaaatcctggccttttctctctagatacata |
54383252 |
T |
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