View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5079_low_4 (Length: 552)

Name: NF5079_low_4
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5079_low_4
NF5079_low_4
[»] chr7 (13 HSPs)
chr7 (317-536)||(1302404-1302627)
chr7 (89-243)||(1302624-1302779)
chr7 (304-536)||(8660337-8660574)
chr7 (418-535)||(8647795-8647912)
chr7 (428-529)||(7876735-7876836)
chr7 (450-535)||(8655443-8655528)
chr7 (430-511)||(8668583-8668664)
chr7 (428-511)||(3148489-3148572)
chr7 (450-535)||(6790504-6790589)
chr7 (206-253)||(7876617-7876665)
chr7 (412-500)||(8630357-8630445)
chr7 (450-511)||(13332073-13332134)
chr7 (196-224)||(8660666-8660694)
[»] chr1 (4 HSPs)
chr1 (411-535)||(4677424-4677548)
chr1 (427-535)||(34465148-34465256)
chr1 (461-511)||(15596177-15596227)
chr1 (450-510)||(52549020-52549080)
[»] chr2 (1 HSPs)
chr2 (428-536)||(16656501-16656609)
[»] chr5 (1 HSPs)
chr5 (453-509)||(42554113-42554169)
[»] chr8 (1 HSPs)
chr8 (414-510)||(43745940-43746042)
[»] chr4 (3 HSPs)
chr4 (451-511)||(9322988-9323048)
chr4 (451-511)||(9334960-9335020)
chr4 (451-511)||(9377467-9377527)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 317 - 536
Target Start/End: Complemental strand, 1302627 - 1302404
Alignment:
Q  317 tattataaacgtagatgattgagttttcggaaacacaaaaaagactattgttttaaaattaagttgctacaaattttgactgagnnnnnnnnnn------ 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||                    
T  1302627 tattataaacgtagatgcttgagttttcggaaacacaaaaaagactattgttttaaaattaagttgctacaaattttg--tgagttttttttctttcttt 1302530  T
Q  411 cagcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggc 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1302529 cagcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgttgctgtgtggc 1302430  T
Q  511 tggagaatcacaatagagtagagatc 536  Q
    ||||||||||||||||||||||||||    
T  1302429 tggagaatcacaatagagtagagatc 1302404  T

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Target: chr7; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 1302779 - 1302624
Alignment:
Q  89 gggggaagttgaagtagacttaacaacctcataatatgtaacnnnnnnncaacctcataatataagattggatcaattgcatgcaataacagattgaatc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1302779 gggggaagttgaagtagacttaacaacctcataatatgtaacaaaaaaacaacctcataatataagattggatcaattgcatgcaatatcagattgaatc 1302680  T
Q  189 aaactcgagc-ttgcttgaaaagtaaaccctatttcttgtgtgacctatatatatt 243  Q
    |||||||| | ||||||||||||||||||||||||  |||||||||||||||||||    
T  1302679 aaactcgaactttgcttgaaaagtaaaccctattttctgtgtgacctatatatatt 1302624  T

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Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 536
Target Start/End: Complemental strand, 8660574 - 8660337
Alignment:
Q  304 aaaccaaggttagtatt-ataaacgtagatgattgagttttcggaaacacaaaaaagactattgttttaaaattaagttgctacaaattttgact-gagn 401  Q
    ||||||||||||||||| | |||| |||||| |||| ||||||||||||||||||  |||| ||||| ||||||| |||||| |||||||||| | |||     
T  8660574 aaaccaaggttagtatttacaaacttagatgtttgacttttcggaaacacaaaaagaactactgtttcaaaattaggttgctgcaaattttgaattgagt 8660475  T
Q  402 nnnnnnnnn---cagcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtg 498  Q
                |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  8660474 tttaagttttttcagcttcttttgattatttgaacgatcatggggataaagtacgaaggacgtgctattggaatagaccttggaacaacctattcgtgtg 8660375  T
Q  499 tttctgtgtggctggagaatcacaatagagtagagatc 536  Q
    || ||||||||||||||||||||||| |||| ||||||    
T  8660374 ttgctgtgtggctggagaatcacaatcgagtcgagatc 8660337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 418 - 535
Target Start/End: Complemental strand, 8647912 - 8647795
Alignment:
Q  418 ttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggctggagaa 517  Q
    ||||| ||| ||||||||||||||||| |||  ||||||||| ||| || ||||||||||||||||| || |||||||||||| |||||||||| ||  |    
T  8647912 ttttgtttacttgaaagatcatggcgaaaaaacacgaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatga 8647813  T
Q  518 tcacaatagagtagagat 535  Q
     ||||||||||| |||||    
T  8647812 acacaatagagttgagat 8647795  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 428 - 529
Target Start/End: Original strand, 7876735 - 7876836
Alignment:
Q  428 ttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggctggagaatcacaataga 527  Q
    ||||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||| || ||||| |||||| |||||||||| ||  | |||||||||    
T  7876735 ttgaaagattatggcgaaaaaatacgaaggacgtgcggtgggaatagaccttggaacaacgtattcctgtgttgctgtgtggcttgatgaacacaataga 7876834  T
Q  528 gt 529  Q
    ||    
T  7876835 gt 7876836  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 535
Target Start/End: Complemental strand, 8655528 - 8655443
Alignment:
Q  450 tacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggctggagaatcacaatagagtagagat 535  Q
    ||||| ||||||||||| ||||||||||| ||||| || ||||| |||||| |||||||||| ||  ||||||||||||| |||||    
T  8655528 tacgagggacgtgctgtcggaatagacctcggaacaacctattcatgtgttgctgtgtggcttgacgatcacaatagagttgagat 8655443  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 8668664 - 8668583
Alignment:
Q  430 gaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    ||||||||||||| | | | |||||||||||||| || |||||||| |||||||| || ||||| |||||| ||||||||||    
T  8668664 gaaagatcatggcaaaagaatacgaaggacgtgcagtgggaatagatcttggaacaacctattcatgtgttgctgtgtggct 8668583  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 511
Target Start/End: Complemental strand, 3148572 - 3148489
Alignment:
Q  428 ttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    ||||||| ||||||| | ||||||||||||| |||| || ||||| ||||||||||| || |||||||| ||| |||| |||||    
T  3148572 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggct 3148489  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 535
Target Start/End: Complemental strand, 6790589 - 6790504
Alignment:
Q  450 tacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggctggagaatcacaatagagtagagat 535  Q
    ||||||||| ||||||| ||||||||||| ||||| || ||||| ||||||  ||||||||| ||  | ||||||||||| |||||    
T  6790589 tacgaaggatgtgctgtgggaatagacctgggaacaacatattcttgtgttggtgtgtggcttgatgaacacaatagagttgagat 6790504  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 7876617 - 7876665
Alignment:
Q  206 aaaagtaaaccctatttctt-gtgtgacctatatatattttcatcgcta 253  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  7876617 aaaagtaaaccctatttcttggtgtgacttatatatatttccatcgcta 7876665  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 500
Target Start/End: Complemental strand, 8630445 - 8630357
Alignment:
Q  412 agcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtt 500  Q
    |||||| |||| ||| ||||| ||||||||| | |||  |||| |||| |||||| ||||||||||||||||| || ||||| ||||||    
T  8630445 agcttcctttgtttacttgaaggatcatggcaagaaaacacgatggacatgctgtgggaatagaccttggaacaacctattcttgtgtt 8630357  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 13332073 - 13332134
Alignment:
Q  450 tacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    |||||||||||||| || ||||| ||||||||||| || || || |||||| ||||||||||    
T  13332073 tacgaaggacgtgcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtggct 13332134  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 8660694 - 8660666
Alignment:
Q  196 agcttgcttgaaaagtaaaccctatttct 224  Q
    |||||||||||||||||||||||||||||    
T  8660694 agcttgcttgaaaagtaaaccctatttct 8660666  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 411 - 535
Target Start/End: Original strand, 4677424 - 4677548
Alignment:
Q  411 cagcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggc 510  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||    
T  4677424 cagcttcttttgattatttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggc 4677523  T
Q  511 tggagaatcacaatagagtagagat 535  Q
    ||||||||||||| ||||| |||||    
T  4677524 tggagaatcacaacagagtggagat 4677548  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 535
Target Start/End: Original strand, 34465148 - 34465256
Alignment:
Q  427 tttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggctggagaatcacaatag 526  Q
    |||||||||||||||||| ||| |  |||||||||||||| |||||||||||||| || || || || |||||| | || |||| |||  | |||| |||    
T  34465148 tttgaaagatcatggcgaaaaaatgtgaaggacgtgctgtgggaatagaccttggcacaacctactcatgtgttgcagtatggcaggaacaacacagtag 34465247  T
Q  527 agtagagat 535  Q
    |||||||||    
T  34465248 agtagagat 34465256  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 15596227 - 15596177
Alignment:
Q  461 tgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    |||| ||||||||||||||||||| || ||||| |||||| ||||||||||    
T  15596227 tgctattggaatagaccttggaacaacgtattcttgtgttgctgtgtggct 15596177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 510
Target Start/End: Original strand, 52549020 - 52549080
Alignment:
Q  450 tacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggc 510  Q
    |||||||||| |||||| |||||||||||| | ||||| ||||| |||||| |||| ||||    
T  52549020 tacgaaggacttgctgtgggaatagacctttgtactacgtattcatgtgttgctgtatggc 52549080  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 536
Target Start/End: Original strand, 16656501 - 16656609
Alignment:
Q  428 ttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggctggagaatcacaataga 527  Q
    ||||||||| ||||| | |||  | ||||||||||| || ||||||||||||||||| |||||||| |||||| |||||||| ||||   |||||| |||    
T  16656501 ttgaaagattatggcaaaaaaacatgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatggaccgtcacaacaga 16656600  T
Q  528 gtagagatc 536  Q
    | |||||||    
T  16656601 gcagagatc 16656609  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 509
Target Start/End: Original strand, 42554113 - 42554169
Alignment:
Q  453 gaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtgg 509  Q
    ||||||||||| || ||||||||||||||||| || |||||||||||| ||||||||    
T  42554113 gaaggacgtgcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgg 42554169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 510
Target Start/End: Complemental strand, 43746042 - 43745940
Alignment:
Q  414 cttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttg------gaatagaccttggaactacttattcgtgtgtttctgtgt 507  Q
    ||||||| ||||| |||| |||||||||||| ||| | | ||||||||| ||| |      |||||||||||||||| || |||||||||||| ||||||    
T  43746042 cttctttcgattacttgagagatcatggcgaaaaaattccaaggacgtgatgtggcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgt 43745943  T
Q  508 ggc 510  Q
    |||    
T  43745942 ggc 43745940  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 9322988 - 9323048
Alignment:
Q  451 acgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    ||||||||||||| || || ||||| |||||||| || ||||| |||||| ||||||||||    
T  9322988 acgaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggct 9323048  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 9334960 - 9335020
Alignment:
Q  451 acgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    ||||||||||||| || || ||||| |||||||| || ||||| |||||| ||||||||||    
T  9334960 acgaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggct 9335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 9377467 - 9377527
Alignment:
Q  451 acgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgtttctgtgtggct 511  Q
    ||||||||||||| || || ||||| |||||||| || ||||| |||||| ||||||||||    
T  9377467 acgaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggct 9377527  T

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