View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_5 (Length: 457)
Name: NF5079_low_5
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 37101 - 36680
Alignment:
| Q |
15 |
catcaaaaccgattttagcgaaaacttcccactacagtagtaaagcaggtcatcgagactcgggcccataagttcaagaactagaacattatagtctccg |
114 |
Q |
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| T |
37101 |
catcaaaaccgattttagcgaaaacttcccactgcagtagtaaagcaggtcatcgagactcgggcccataagttcaagaactagaacattatagtctccg |
37002 |
T |
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| Q |
115 |
tcagtaccaaaccatttcattcttggaataccaccttaaattccattactataataaattagaaaggactgagaaaacaaagggaaaa-tattgtgaggg |
213 |
Q |
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| T |
37001 |
tcagtaccaaaccatttcattcttggaataccaccttaaattccattactataataaattagaaaggactgagaaaacaaagggaaaaatattgtgaggg |
36902 |
T |
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| Q |
214 |
aaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagtagctgtggttgttga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901 |
aaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagtagctgtggttgttga |
36802 |
T |
|
| Q |
314 |
gttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaaagatgtaaattaaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36801 |
gttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaaagatgtaaattaaca |
36702 |
T |
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| Q |
414 |
atcaaaatttaaacatgcatct |
435 |
Q |
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|||||||||||||||||||||| |
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| T |
36701 |
atcaaaatttaaacatgcatct |
36680 |
T |
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