View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_6 (Length: 377)
Name: NF5079_low_6
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 377
Target Start/End: Complemental strand, 45146416 - 45146063
Alignment:
| Q |
23 |
gactaattagcaactccttgtataaagtattgtgcatctataacagtattcaatggaacatcttaattcagtttataataactctttttgtgacctaact |
122 |
Q |
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| T |
45146416 |
gactaattagcaactccttatataaagtattgtgcatctataagagtattcaatggaacatcttaattcagtttataataactctttttgtgacctaact |
45146317 |
T |
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| Q |
123 |
cttaataaaagcatcaattgtcaagactaaaacacatgagaagagtccggcctaaaagatttatctatcaattagattagagaaccctatgacttaagta |
222 |
Q |
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| T |
45146316 |
cttaataaaagcatcaattgtcaagactaaaacacatgagaagagtccggcctaaaagatttatctattaattagattagagaaccctataacttaaata |
45146217 |
T |
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| Q |
223 |
gcacattgaacaattttatttactcaacgcggaacacctaacgttgtactgttgtatatcttcctttgtggtgtgttacttgtgaaatgagagttgaggg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45146216 |
tcacattgaacaattttatttactcaacgcggaacacctaacgttgtaatgttgtatatcttcctttgtggtgtgttacttgtgaattgagagttgaggg |
45146117 |
T |
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| Q |
323 |
aacaaagatgtgcagcaaaaaatagacatggaatgactttttgactgtattatta |
377 |
Q |
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||||||||||||| | ||||||| | ||||||||| ||||||| |||||||||| |
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| T |
45146116 |
aacaaagatgtgccgacaaaaata-aaatggaatgaatttttgaatgtattatta |
45146063 |
T |
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