View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079_low_9 (Length: 347)
Name: NF5079_low_9
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 158 - 344
Target Start/End: Original strand, 41589109 - 41589292
Alignment:
| Q |
158 |
actgctgttactgctattactactactcttccttcttcttccatccagcatgagtatcaacaaaactacaactttgtggatagccctaacttcagtgatt |
257 |
Q |
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| T |
41589109 |
actgctgttactgctattactactactcttccttc---ttccatccagcatgagtatcaacaaaactacaactttgtggatagccctaacttcagtgatt |
41589205 |
T |
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| Q |
258 |
atagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaattacaaccctttgctactcc |
344 |
Q |
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| T |
41589206 |
atagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaattacaacccttttctactcc |
41589292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 41588972 - 41589082
Alignment:
| Q |
18 |
ctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgt |
117 |
Q |
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| T |
41588972 |
ctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgt |
41589071 |
T |
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| Q |
118 |
tattgctcaca |
128 |
Q |
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| T |
41589072 |
tattgctcaca |
41589082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 41556520 - 41556647
Alignment:
| Q |
217 |
acaaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatac |
316 |
Q |
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| T |
41556520 |
acaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaattatagactcatac |
41556619 |
T |
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| Q |
317 |
aactacaattacaaccctttgctactcc |
344 |
Q |
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| T |
41556620 |
aactataataacaacccttttctactcc |
41556647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 41556330 - 41556440
Alignment:
| Q |
18 |
ctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgt |
117 |
Q |
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| T |
41556330 |
ctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaactcactgagaaatcatttcatgatgt |
41556429 |
T |
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| Q |
118 |
tattgctcaca |
128 |
Q |
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| T |
41556430 |
tattgttcaca |
41556440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 41570028 - 41570137
Alignment:
| Q |
19 |
tataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgtt |
118 |
Q |
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| T |
41570028 |
tataaaccgatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgtt |
41570127 |
T |
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| Q |
119 |
attgctcaca |
128 |
Q |
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|||| ||||| |
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| T |
41570128 |
attgttcaca |
41570137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 41579046 - 41579143
Alignment:
| Q |
31 |
tctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
128 |
Q |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
41579143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 41570240 - 41570352
Alignment:
| Q |
219 |
aaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaa |
318 |
Q |
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| T |
41570240 |
aaaactacaaatttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaa |
41570339 |
T |
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| Q |
319 |
ctacaattacaac |
331 |
Q |
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| T |
41570340 |
ctacaattacaac |
41570352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 41579173 - 41579251
Alignment:
| Q |
228 |
actttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattat |
306 |
Q |
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| T |
41579173 |
actttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
41579251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 41582725 - 41582763
Alignment:
| Q |
306 |
tagactcatacaactacaattacaaccctttgctactcc |
344 |
Q |
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| T |
41582725 |
tagactcatacaactacaattacaacccttttctactcc |
41582763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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