View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5080-Insertion-1 (Length: 1080)
Name: NF5080-Insertion-1
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5080-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 845; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 845; E-Value: 0
Query Start/End: Original strand, 7 - 1022
Target Start/End: Original strand, 10560170 - 10561204
Alignment:
| Q |
7 |
agataagctcaactaagtcaatccagtcagaccttataggtttcatgattttaatttttaatacaaggacctaaagatatggaacaaagtgtttgagaag |
106 |
Q |
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| T |
10560170 |
agataagctcaactaagtcaatccagtcagatcttataggtttcatgattttaatttttaatacaaggacctaaagatatggaacaaagtgtttgagaag |
10560269 |
T |
|
| Q |
107 |
gcagagaagttggcaggcactaaaagaggaagcatagcgccgctgttctgattgaaacacttcctgcagtgtttcaaatggatgaaattttgtatgagct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10560270 |
gcagagaagttggcaggcactaaaagaggaagcatagagccgctgttctgattgaaacacttcctgcagtgtttcaaatggatgaaattttgtatgagct |
10560369 |
T |
|
| Q |
207 |
cagggttataaatctgtaggtctgaaccgcaggcgttaggatttcatttcaattatgttaagactttctcggctcacacatattggttgttaccttatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10560370 |
cagggttataaatctgtaggtctgaaccgcaggcgttaggatttcatttcaattatgttaagactttctcggctcacacatattggttgttaccttatta |
10560469 |
T |
|
| Q |
307 |
aaattgccatatttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttcattgtatttgtggttgatgatagtttattgttttaaa |
406 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10560470 |
atgttgccatatttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttcattatatttgtggttgatgatagtttattgttttaaa |
10560569 |
T |
|
| Q |
407 |
ttatgtcctgtgttacctaagttctctgttatctttgcatgatttcatagtttaaatgttaagcaaaattgataagaacaaaatttgtgattgtagccat |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10560570 |
ttatgtcctgtgttacctaagttctctgttatctttgcatgatttcatagtttaaatgttaagcaaaattgataagaacaaaatttgtgattgtagccat |
10560669 |
T |
|
| Q |
507 |
tttgaattaaactacttatactttatgtc-tcaag-------agtaacaactacaccaaggcatatcttgttggtgtgtcaagtgtgaattagaaattgg |
598 |
Q |
| |
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||||||||||||||||||||||||||||| | || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10560670 |
tttgaattaaactacttatactttatgtcaactagctactttagtaacaact--accgaggcatatcttgttggtgtgtcaagtgtgaattagaaattgg |
10560767 |
T |
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| Q |
599 |
atggaaacgtagacgttgaacaacatataagtgaggcaacccatttacctaatgccttaacattttgggtgaagatatggtgtctaagtcacttgtatag |
698 |
Q |
| |
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| T |
10560768 |
atggaaacgtagacgttgaacaacatataagtgaggcaacccatttacctaatgccttaacattttgggtgaagatatggtgtctaagtcacttgtatag |
10560867 |
T |
|
| Q |
699 |
ttgtttttaccccaactgatctttgaaggaaagcgagatcaaagatctattacaaataatggatacaactccgatcttcttcaatacttatagaaaagag |
798 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10560868 |
ttgtttttaccccaactgatctttgaaggaaagcgagatcaaagatctattacaaataatggatacaactctgatcttcttcaatacttatagaaaagag |
10560967 |
T |
|
| Q |
799 |
attattgtgtacaagatggtttcactagaatttgatcgaagatcctagcgtaataatttccctttgcagctatttc-aatttc-atccgg-tttactaga |
895 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||||||||| |
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| T |
10560968 |
attattgtgtacaagatggttttactagaatttgatcgaagatcctagcgtaataatttccctttgcagctatttcaaatttcaatctggttttactaga |
10561067 |
T |
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| Q |
896 |
atttgatcgaagatcctagcgt-ataattttcctttgcagctatttc-aatttc-atctttc-attagaaactattttct-atg-atca--gagtgc-tt |
986 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| |||| ||||| || |
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| T |
10561068 |
atttgatcgaagatcctagcgtaataattttcctttgcagctatttcaaatttcaatctttcaattagaaactattttctaatgaatcaagaagtgcttt |
10561167 |
T |
|
| Q |
987 |
ttccacg-ttggacctacttatctgtctctctagtct |
1022 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
10561168 |
ttccacgtttggacctacttatctgtctctctagtct |
10561204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 10558142 - 10558273
Alignment:
| Q |
79 |
aaagatatggaacaaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcata-gcgccgctgttctgattgaaacacttcctgcagtg |
177 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||| || |||||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||| |
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| T |
10558142 |
aaagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtg |
10558241 |
T |
|
| Q |
178 |
tttcaaatggatgaaattttgtatgagctcag |
209 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |
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| T |
10558242 |
tttcaaatggatgaaattctgtatgagctcag |
10558273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 319 - 429
Target Start/End: Original strand, 10559509 - 10559613
Alignment:
| Q |
319 |
ttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttcattgtatttgtggttgatgatagtttattgttttaaattatgtcctgtg |
418 |
Q |
| |
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||||| ||||||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
10559509 |
ttcaccctgtggaactgtcaaagctttgaattttgatttggttcatacttcattgt------ggttgatgatagtttattgttctaaattatgtcctgtg |
10559602 |
T |
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| Q |
419 |
ttacctaagtt |
429 |
Q |
| |
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||||||||||| |
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| T |
10559603 |
ttacctaagtt |
10559613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 594 - 682
Target Start/End: Complemental strand, 32568072 - 32567984
Alignment:
| Q |
594 |
attggatggaaacgtagacgttgaacaacatataagtgaggcaacccatttacctaatgccttaacattttgggtgaagatatggtgtc |
682 |
Q |
| |
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|||||||||||| || | ||||| ||| ||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||||| |
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| T |
32568072 |
attggatggaaaagtgggtgttgagcaatatataagtgaggcaacccacaaacctaatgccttaaggttttaggttaagatgtggtgtc |
32567984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 647 - 688
Target Start/End: Original strand, 22562032 - 22562073
Alignment:
| Q |
647 |
ctaatgccttaacattttgggtgaagatatggtgtctaagtc |
688 |
Q |
| |
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| T |
22562032 |
ctaatgccttaagattttggatgaagatatgatgtctaagtc |
22562073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 649 - 694
Target Start/End: Complemental strand, 23714938 - 23714893
Alignment:
| Q |
649 |
aatgccttaacattttgggtgaagatatggtgtctaagtcacttgt |
694 |
Q |
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| T |
23714938 |
aatgccttaagattttgggtgaagatgtggtgtccaactcacttgt |
23714893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 608 - 694
Target Start/End: Complemental strand, 17675313 - 17675228
Alignment:
| Q |
608 |
tagacgttgaacaacatataagtgaggcaacccatttacctaatgccttaacattttgggtgaagatatggtgtctaagtcacttgt |
694 |
Q |
| |
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|||| |||||||||||||||||||| ||||||| || |||||| ||||| ||| |||||||||| ||||||| || |||||||| |
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| T |
17675313 |
tagatgttgaacaacatataagtgatataacccatata-ctaatgacttaaggtttagggtgaagatgtggtgtcaaactcacttgt |
17675228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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