View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5080_high_1 (Length: 570)
Name: NF5080_high_1
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5080_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 24224754 - 24225284
Alignment:
| Q |
1 |
attgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttgttcggnnnnnnn |
100 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24224754 |
attgtttatcgctttcgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttattcggaaaaaaa |
24224853 |
T |
|
| Q |
101 |
-tttatgattgaagaaaaagcatggttccttccgtcaattgcttggtagaaacaaattagagaaactgggaacgtgatgtttgcttcgaaatggtaattt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
24224854 |
atttatgattgaagaaaaagcatggttccttccgtcaattgcttggtagaaacaaattagagaaattgggaacatgatgtttgcttcgaaatggtaattt |
24224953 |
T |
|
| Q |
200 |
gcaacattccactaattggtattatttctttggatttttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaattaattgcatca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224954 |
gcaacattccactaattggtattatttctttggatttttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaattaattgcatca |
24225053 |
T |
|
| Q |
300 |
atcatcaatattttggattttagagacgtagaagttattctttcaccgtggtatttacttg-----tttctttgatgcttgtcgtcattggttaatgttt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24225054 |
atcatcaatattttggattttagagacgtagaagttattctttcaccatggtatttacttgtttaatttctttgatgcttgtcgtcattggttaatgttt |
24225153 |
T |
|
| Q |
395 |
gttcggtttgctccggttgttggttgatatgtatagttttgtcatgttttgggatgtgtatgggtgttcttttcgtttgagtttttgtctttggatcgct |
494 |
Q |
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| T |
24225154 |
gttcggtctgctccggttgttggttgatatgtatagttttgtcatgttttgggatgtgtatgggtgttctttttgtttgagtttttgtctttggatcgct |
24225253 |
T |
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| Q |
495 |
cttgttcttggtttatttgtttgaggatgca |
525 |
Q |
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| T |
24225254 |
cttgttcttggtttatttgtttgaggatgca |
24225284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17927830 - 17927761
Alignment:
| Q |
1 |
attgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaattt |
71 |
Q |
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| T |
17927830 |
attgtttgtagcttccgctattgagttttcaaaagtttg-ggaatgttgtgtgattgatttggtttaattt |
17927761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 10740797 - 10740855
Alignment:
| Q |
11 |
gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatt |
70 |
Q |
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| T |
10740797 |
gcttccgcagttgagttcccaaaagtttg-ggaatgttgtgtgattgatttggtttaatt |
10740855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 13166651 - 13166727
Alignment:
| Q |
11 |
gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttg |
88 |
Q |
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| T |
13166651 |
gcttccgcttttgtgttcccaaaaatttg-ggaattttgtgtgattgatttggtttaatttatagtgttggtcttttg |
13166727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 9401822 - 9401883
Alignment:
| Q |
12 |
cttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaattttta |
74 |
Q |
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| T |
9401822 |
cttccgttgttgagttcccaaaaatttg-ggaatattgtgtgattgatttggtttgattttta |
9401883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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