View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5080_high_5 (Length: 261)
Name: NF5080_high_5
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5080_high_5 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
| | |
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| [»] chr7 (9 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 54967508 - 54967257
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
54967508 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagg |
54967409 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
54967408 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacg |
54967309 |
T |
|
| Q |
210 |
ctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
|||||| | ||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
54967308 |
ctaaaattctctttgtgtcattacgcttttatttcacgtttccgctagtgcc |
54967257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 54980140 - 54979890
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
54980140 |
catcctcatagagagttttcttgtgagagaaatagcgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagg |
54980041 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| | |
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|
| T |
54980040 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccatg |
54979941 |
T |
|
| Q |
210 |
ctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgc |
260 |
Q |
| |
|
|||||| | ||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
54979940 |
ctaaaattctctttgtgtcattacacttttatttcacgtttccgctagtgc |
54979890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 44782822 - 44782573
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
44782822 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttgcaaattgagagatatattgtagtgagatccacctaagg |
44782723 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||||| |
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|
| T |
44782722 |
gtgaagttgttgtattcccattatcattatagtggaag-ttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaaggttttccac |
44782624 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtg |
259 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44782623 |
gctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtg |
44782573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 39298725 - 39298947
Alignment:
| Q |
30 |
ttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgttgtattccca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
39298725 |
ttgtgagagaaatagtgagccaatttgtgagagtgt-ccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccct |
39298823 |
T |
|
| Q |
130 |
ttatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctttatgtca |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| |||||||| ||||| |||| ||||| |||||||||||| ||| |||||| | |||| ||||| |
|
|
| T |
39298824 |
ttatcattatagtggaag--tttaagaggcacaagggtcccgtgattttt-ccttcatcacattgagaaggtttttcacactaaaattatcttcgtgtca |
39298920 |
T |
|
| Q |
230 |
ttacatttatatttcacgtttccgcta |
256 |
Q |
| |
|
||||| |||||||||||||||| |||| |
|
|
| T |
39298921 |
ttacacttatatttcacgtttctgcta |
39298947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 17645701 - 17645891
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
17645701 |
tcataaagagtttccttgtgagataaatagtgagccaatttgtaagagtgttccttacaaattgagagatacgttgtagtgagatccacctaggg----- |
17645795 |
T |
|
| Q |
115 |
gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaa |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||| ||| | | | |||||||||||||||||||||| |
|
|
| T |
17645796 |
gttgttgtattgtcattatcattatagtggaag--tttaagacgctcaagagtcccgtggttttt---ttttttatattgagaaggttttccacgctaaa |
17645890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 18556523 - 18556362
Alignment:
| Q |
87 |
attgtagtgagatccacctacgggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttcccttt |
185 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||||||||| | || ||||||||| ||||| ||||| |
|
|
| T |
18556523 |
attgtaatgagatccacctaagggtgaagttgttgtattctcattgtcattatagtggaag--tttaagaggctcgagggtcccgtggttttttgccttt |
18556426 |
T |
|
| Q |
186 |
ctcacactgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttc |
251 |
Q |
| |
|
|||| | ||||||||||||||||||||||| || | | ||||||||| |||||||||||||||| |
|
|
| T |
18556425 |
ctcagattgagaaggttttccacgctaaaa--ttttatgtgtcattacgcttatatttcacgtttc |
18556362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 50603225 - 50603318
Alignment:
| Q |
119 |
ttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
215 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||| | | || ||||||||||| | || |||||| ||||||||||||||||||||||| |
|
|
| T |
50603225 |
ttgtattcccattattattatagtggagattt--aagaggcctacgggttccgtggttttttc-ttactcacattgagaaggttttccacgctaaaa |
50603318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 9757511 - 9757259
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
9757511 |
catcttcatagagagttttcttttgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagg |
9757412 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagt-ttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9757411 |
gtgaagttgttgtattcccattatcattatagtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccac |
9757312 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||||| | ||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9757311 |
gctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcc |
9757259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 42683118 - 42682886
Alignment:
| Q |
21 |
agagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgtt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
42683118 |
agagttttcttgtgagagaaatagtgagccaatttgtaagagtgttccttacaaattgagagatatattgtagtgagatgcacctaagggtgaagttgtt |
42683019 |
T |
|
| Q |
121 |
gtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttc |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
42683018 |
gtattcccattatcattatagtggaag-ttttaagaggtccaagggtcccgtgattttt-cctttctcacattgagaaggttttccacgctgaaa----t |
42682925 |
T |
|
| Q |
221 |
tttatgtcattacatttatatttcacgtttccgctagtg |
259 |
Q |
| |
|
| | ||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
42682924 |
tatgtgtcattacgtttatattttacgttttcgctagtg |
42682886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 37287174 - 37286932
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
||||||||| ||| ||| ||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
37287174 |
tcatagagaatttccttctgagagaaacagtgagccgatttgtgttaatgttccttacaaattgagagatatattgtagtgagctccatctaagggtgaa |
37287075 |
T |
|
| Q |
115 |
-gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaa |
213 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |||| || ||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||||| |
|
|
| T |
37287074 |
agttgttgtattcttattattattatagtggaagttt--aagatgcttaagggtcccgtgatttttcctttt-tcacattgagaaggttttccatgctaa |
37286978 |
T |
|
| Q |
214 |
aactttctttatgtcattacatttatatttcacgtttccgctagtg |
259 |
Q |
| |
|
|| ||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37286977 |
aattttctttctgtcattacgtttatatttcacgtttccgctagtg |
37286932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 41481517 - 41481766
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41481517 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagg |
41481616 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
41481617 |
gtgaagttgttgtattcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccac |
41481715 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtg |
259 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41481716 |
gctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtg |
41481766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 36167516 - 36167766
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
36167516 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagg |
36167615 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
36167616 |
gtgaagttgttgtattcccattatcattatagtggaag-ttttaagaggcccaagggt-ccgtggttttttccctttctcatattgagaaggttttccac |
36167713 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36167714 |
gctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgcc |
36167766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 18951410 - 18951171
Alignment:
| Q |
18 |
tagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagtt |
117 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||| |
|
|
| T |
18951410 |
tagagagttttctcttgagggaaataatgagccaatttgtgagagtgttccttacaaattgagagataaattatagtgagatcaacctaagggtgaagtt |
18951311 |
T |
|
| Q |
118 |
gttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccacgctaaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
18951310 |
gttgtattcccattatcattatagtggaag-ttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggttttccatgctaaaa- |
18951213 |
T |
|
| Q |
217 |
tttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||| | ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
18951212 |
-ttc--tgtgtcattacgcttatatttcatgtttccgctagtgcc |
18951171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 2638 - 2887
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2638 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagcgttccttacaaattgagagatatattgtagtgagatccacctaagg |
2737 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
2738 |
gtgaagttgttgtattcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccac |
2836 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtg |
259 |
Q |
| |
|
||||||| | ||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
2837 |
gctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtg |
2887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 4835871 - 4835622
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4835871 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagg |
4835772 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4835771 |
gtgaagttgttgcattcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccac |
4835673 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||||| |||| | ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
4835672 |
gctaaaa--ttctctgtgtcattacgtttatatttcacgtttccactagtgcc |
4835622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 25857426 - 25857178
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
25857426 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaag |
25857327 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
25857326 |
gtgaagttgttgtattcccattatcattatagtggaag-ttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacg |
25857228 |
T |
|
| Q |
210 |
ctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
|||||| |||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25857227 |
ctaaaa--ttctctgtgtcattacgcttatatttcacgtttccgctagtgcc |
25857178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 4842946 - 4842695
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
4842946 |
catcctcataaagagttttcttgtgagagaaatattgagccaatttgtgagagtgttccttaaaaattgagagatatattgtagtgagatccacctaagg |
4842847 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4842846 |
gtgaagttgttgtattcctattatcattatagtggaag-ttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaaggttttccac |
4842748 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||||| | ||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4842747 |
gctaaaattctctttgtgtcattacacttatatttcacgtttccgctagtgcc |
4842695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 24379576 - 24379326
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
24379576 |
catcctcatagagagttttcttgtgaaagaaatagtgagccaatttatgagagtgttccttacaaattgagagatatattgtagggagatccacctaagg |
24379477 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacg |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24379476 |
gtgaagttgttgtattcctattatcattatagtggaag-ttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaaggttttccacg |
24379378 |
T |
|
| Q |
210 |
ctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||| | ||| ||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
24379377 |
ttaaaattatctctatgtcattacgtttatattttacgtttccactagtgcc |
24379326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 13465247 - 13465050
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
13465247 |
tcatagaatgttttcttgtgaga--aatagtgaaccaatttgtaagagtgttccttacaaattgagagatacattgtagtgagatccacctgagggtgaa |
13465150 |
T |
|
| Q |
115 |
gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13465149 |
cttgttgtattcccattatcattatagtggatg-ttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaaggttttccacgctaaa |
13465051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 27341222 - 27340983
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
27341222 |
tcatatagagtttctttgtgagagaaatagtgagccaacctgtgagagtgttccttacaaattgagagatatattgtagtgagatccatcta--agagaa |
27341125 |
T |
|
| Q |
115 |
gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaa |
214 |
Q |
| |
|
||| ||||||| ||||||||||| |||| |||| ||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
27341124 |
gttattgtatttccattatcattgtagtagaag--tttaagaggtacaagggtcccgtggttttt-cctttcttacattgagaaggttttccacgctaaa |
27341028 |
T |
|
| Q |
215 |
actttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
| |||| | ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
27341027 |
a--ttctctgtgtcattacgcttatatttcatgtttccgctagtgcc |
27340983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 4603584 - 4603755
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||| || |
|
|
| T |
4603584 |
tcataaagagttttcttgtgagagaaatagagagccaatttgtaag--tgttccttacaaattgaaagatatattgtagtgagatccacctaagggtaaa |
4603681 |
T |
|
| Q |
115 |
gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtgg-tttttccctttctc |
188 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
4603682 |
gttgttgtatttccattatcattatagtggaag-gtttaagaggcccaaaggtcccgtggttttttccctttctc |
4603755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 17845763 - 17845958
Alignment:
| Q |
21 |
agagttttcttgtgagagaaatagtgagccaatttg----tgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagt |
116 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17845763 |
agagtttccttgtgagagaaatattgagtcaatttaattatgagagtgttccttacaaattgagagatatattgtagtgagattcacctaagggtgaagt |
17845862 |
T |
|
| Q |
117 |
tgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||||||| |||| |||||| || ||||||||||||| |||||| |
|
|
| T |
17845863 |
tgttgtatttccattatcattatagtggaag--tttaagaggtccaaaggtcctgtggttttt-ccttcctcacattgggaaggttttccactctaaaa |
17845958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 38994332 - 38994115
Alignment:
| Q |
15 |
tcatagagagttttc-ttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtga |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38994332 |
tcatagagagttttccttgtgagagaaataatgagccaatttgtgatagtgttccttacaaattgagagatatattgtagtgagatccacctaagg---- |
38994237 |
T |
|
| Q |
114 |
agttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaa |
213 |
Q |
| |
|
|||||||||| || ||| ||||||||||| | || ||||||||||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
38994236 |
-----------------tatcattataatgaaag-ttttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaa |
38994155 |
T |
|
| Q |
214 |
aactttctttatgtcattacatttatatttcacgtttccg |
253 |
Q |
| |
|
|| | ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
38994154 |
aattctctttgtgtcattacatttatatttcatgtttccg |
38994115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 342513 - 342264
Alignment:
| Q |
10 |
catcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |
|
|
| T |
342513 |
catcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtcagatacacctaagg |
342414 |
T |
|
| Q |
110 |
gtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggttt-ttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| | |||||||||||| ||| |
|
|
| T |
342413 |
gtgaaattgttgtattcccattatcattatagtggaag-ttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcac |
342315 |
T |
|
| Q |
209 |
gctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
342314 |
gctaaaa--ttctttgtgtcattacgcttatatttcacgtttctgctagtgcc |
342264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 37037838 - 37038035
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||| ||||||||||||| | ||||| |
|
|
| T |
37037838 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgtttcttataaattgagagtcagattgtaatgagatccacctaagagtgaa |
37037937 |
T |
|
| Q |
115 |
gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaa |
214 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||| ||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
37037938 |
gttgttgtattctcattatcgttatagtgaaag--tttaagaggcccaagggtcccgtggtttct-cctttctcacattgagaaggttttcctcgctaaa |
37038034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 89 - 261
Target Start/End: Original strand, 22981494 - 22981663
Alignment:
| Q |
89 |
tgtagtgagatccacctacgggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctc |
188 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22981494 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttt-aagaggcccaagggtcccgtggtttttccctttctc |
22981592 |
T |
|
| Q |
189 |
acactgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| | ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
22981593 |
acattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatttttcacgtttccgctagtgcc |
22981663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 89 - 261
Target Start/End: Complemental strand, 23806914 - 23806745
Alignment:
| Q |
89 |
tgtagtgagatccacctacgggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctc |
188 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23806914 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttt-aagaggcccaagggtcccgtggtttttccctttctc |
23806816 |
T |
|
| Q |
189 |
acactgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| | ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
23806815 |
acattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatttttcacgtttccgctagtgcc |
23806745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 31152105 - 31152018
Alignment:
| Q |
119 |
ttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccac |
208 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||| | | ||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
31152105 |
ttgtattcccattattattatagtggagattt--aagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccac |
31152018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 16698403 - 16698599
Alignment:
| Q |
15 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
16698403 |
tcatagagagttttcttgtgggagaaatagggacccaattcgtgagagtgtttcttacaaattgagagatacattgtagtgagatccacataagggtgaa |
16698502 |
T |
|
| Q |
115 |
gttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
16698503 |
---gttgtattcccattatcattatagtggaag-ttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaa |
16698598 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 92 - 261
Target Start/End: Complemental strand, 22764029 - 22763861
Alignment:
| Q |
92 |
agtgagatccacctacgggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcaca |
191 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
22764029 |
agtgagattcacctaagagtgaagttgttgtattcccattatcattatagcataagtttt-aagaggcccaatggtcccgtggtttttccctttctcata |
22763931 |
T |
|
| Q |
192 |
ctgagaaggttttccacgctaaaactttctttatgtcattacatttatatttcacgtttccgctagtgcc |
261 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| | ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
22763930 |
ttgagaaggttttccatgctaaaattctctttgtatcattacgcttatatttcacgtttctgctagtgcc |
22763861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 33807965 - 33808130
Alignment:
| Q |
41 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgttgtattcccattatcattata |
140 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| |||||||| | ||||||||||||||| |||||| |
|
|
| T |
33807965 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
33808058 |
T |
|
| Q |
141 |
gtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
215 |
Q |
| |
|
||||| ||| |||||||| | | |||||||||||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
33808059 |
gtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaa |
33808130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 33811619 - 33811784
Alignment:
| Q |
41 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgttgtattcccattatcattata |
140 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| |||||||| | ||||||||||||||| |||||| |
|
|
| T |
33811619 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
33811712 |
T |
|
| Q |
141 |
gtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
215 |
Q |
| |
|
||||| ||| |||||||| | | |||||||||||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
33811713 |
gtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaa |
33811784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 33816537 - 33816702
Alignment:
| Q |
41 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgttgtattcccattatcattata |
140 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| |||||||| | ||||||||||||||| |||||| |
|
|
| T |
33816537 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
33816630 |
T |
|
| Q |
141 |
gtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
215 |
Q |
| |
|
||||| ||| |||||||| | | |||||||||||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
33816631 |
gtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaa |
33816702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 26771 - 26581
Alignment:
| Q |
21 |
agagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgtt |
120 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
26771 |
agagtttttttgtgaga-aaatagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagtt |
26673 |
T |
|
| Q |
121 |
gtattcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaa |
215 |
Q |
| |
|
|||||| | ||||||||| |||||||| ||||||||||||||| ||||||| |||||| |||| |||||| ||| |||||||||||| |||||| |
|
|
| T |
26672 |
gtattctcgttatcattagagtggaag--tttaagaggcccaagggtcccgtagttttt-ccttactcacattgaaaaggttttccaccctaaaa |
26581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 27642033 - 27642261
Alignment:
| Q |
23 |
agttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctacgggtgaagttgttgt |
122 |
Q |
| |
|
||||| ||| |||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | |||||||||| | |
|
|
| T |
27642033 |
agtttccttttgagagaaataggaagtcaatttgtgagagtgttccttacaaatagagagatatattgtagtgagatccacttaaagatgaagttgtttt |
27642132 |
T |
|
| Q |
123 |
attcccattatcattatagtggaagtttttaagaggcccaagagtcccgtggtttttccctttctcacactgagaaggttttccacgctaaaactttctt |
222 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||| || |||||| ||||| ||||||||||| |||||||||||| ||||| |||| ||| | |
|
|
| T |
27642133 |
attcccattattattatagtggaag--tttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaa--ttcct |
27642228 |
T |
|
| Q |
223 |
tatgtcattacatttatatttcacgtttccgct |
255 |
Q |
| |
|
| | ||||||| |||||||||||||||||||| |
|
|
| T |
27642229 |
tgtatcattacgcttatatttcacgtttccgct |
27642261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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