View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5080_high_6 (Length: 239)
Name: NF5080_high_6
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5080_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 53053126 - 53052934
Alignment:
| Q |
1 |
ttgacaaagtaccaaaaagactttaaaa-tttgaagacttattagagtaacatagtatattgcgtgaagcatctaaactaaactgcttgttaagtgttgc |
99 |
Q |
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| T |
53053126 |
ttgacaaagtaccaaaaagactttaaaaatttgaagact-attagagtaacatagtatattgcgtgaagcatctaaactaaactgcttg----------- |
53053039 |
T |
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| Q |
100 |
ttgggcagccagagtttactattataatatggggtggttggtatgcacgaccaaggatatgcatgttcatgacaacaaagaaaacttaatttatgaactc |
199 |
Q |
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| T |
53053038 |
---ggcagccagagtttactattataatatggggtggttggtatgcacgaccaaggatgtgcatgttcatgacaacaaagaaaacttaatttatgaactc |
53052942 |
T |
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