View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5080_low_2 (Length: 352)
Name: NF5080_low_2
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5080_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 32849229 - 32849393
Alignment:
| Q |
9 |
agcataggacattcttgaagcaagttgagcaaagaattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgta |
108 |
Q |
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| T |
32849229 |
agcataggacattcttgaagcaagttgagcagataattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgta |
32849328 |
T |
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| Q |
109 |
gatcatggggttcagcaagcagccactgtttgtactagaacatcaagtagtaattagtacaaaac |
173 |
Q |
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| T |
32849329 |
gatcatggggttcagcaagcagccactgtttgtactagaacatcaagtagtaattagtacaaaac |
32849393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 32849471 - 32849555
Alignment:
| Q |
250 |
aacctttgttgaagtacgacccaacttcttaatggagattgtcaaccttttcaaggaaggtgggatgcagagtttgtccaagctt |
334 |
Q |
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| T |
32849471 |
aacctttgttgaagtacgacccaacttcttaatggagattgtcaaccttttcaaggaaggtgggatgcagagtttgtccaagctt |
32849555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 17478437 - 17478275
Alignment:
| Q |
9 |
agcataggacattcttgaagcaagttgagcaaagaattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgta |
108 |
Q |
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| T |
17478437 |
agcatcggacatttctgaagcaagctgagcagagaattggagttaaaccagagaagaatgagctctagacgtatcaaatagtgaaattcttgaaaaagta |
17478338 |
T |
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| Q |
109 |
gatcatggggttcagcaagcagccactgtttgtactagaacatcaagtagtaattagtacaaaa |
172 |
Q |
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| T |
17478337 |
gattgtggggttcaccaagcagccactgtttgtacaag-acaccaactactaattagtacaaaa |
17478275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 4442136 - 4441971
Alignment:
| Q |
7 |
gtagcataggacattcttgaagcaagttgagcaaagaattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatg |
106 |
Q |
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| T |
4442136 |
gtagcacaggacatttttgaagcaaggaaagcagataattggagttaaaccagggaagaatgagctctaaatgaagcaaatagcgaaattcttgaaaaaa |
4442037 |
T |
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| Q |
107 |
tagatcatggggttcagcaagcagccactgtttgtactagaacatcaagtagtaattagtacaaaac |
173 |
Q |
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| T |
4442036 |
tagatcacgaggttcaccaagcagccactgttcgt-ccacattatcaagtagcaattagtacaaaac |
4441971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 4427327 - 4427437
Alignment:
| Q |
62 |
aagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaagcagccactgtttgtactagaacatcaagtagtaa |
161 |
Q |
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|||| |||| |||||||||| ||||| || || ||||||||||| |||||||||||| || |||||||||||| |||| || | ||||||| |||||| |
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| T |
4427327 |
aagagtgagttctaggcgaaacaaatagcaaagttcttgaaaatttagatcatggggctctccaagcagccactatttgaac-atgacatcaaatagtaa |
4427425 |
T |
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| Q |
162 |
ttagtacaaaac |
173 |
Q |
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| T |
4427426 |
ttagtacaaaac |
4427437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 8382615 - 8382741
Alignment:
| Q |
12 |
ataggacattcttgaagcaagttgagcaaagaattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagat |
111 |
Q |
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|||||||||| ||||||||| |||| | ||||||| | ||||||||||||||| |||| |||| ||| |||||||| ||||||||||||| |||||| |
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| T |
8382615 |
ataggacatttgtgaagcaagctgaggagagaattggagctaaaccagggaagagtgagatctaaatgaagcaaattgcaaaattcttgaaaaagtagat |
8382714 |
T |
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| Q |
112 |
catggggttcagcaagcagccactgtt |
138 |
Q |
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| T |
8382715 |
cacggggttcaccaagcagccactgtt |
8382741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 8366612 - 8366738
Alignment:
| Q |
12 |
ataggacattcttgaagcaagttgagcaaagaattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagat |
111 |
Q |
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|||||||||| ||||||||| |||| | ||||||| | ||||||||||||||||| |||| ||| || || || ||| ||||||||| |||||| |
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| T |
8366612 |
ataggacatttgtgaagcaagctgagaagagaattggagtcaaaccagggaagaatgatatctaaatgaagcagatagcaaaaatcttgaaaaagtagat |
8366711 |
T |
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| Q |
112 |
catggggttcagcaagcagccactgtt |
138 |
Q |
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| T |
8366712 |
cacggggttcaccaagcagccactgtt |
8366738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 8341447 - 8341327
Alignment:
| Q |
52 |
taaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaagcagccactgtttgtactagaacat |
151 |
Q |
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||||||||| ||||| |||||| ||||||| ||||| |||||||||||||| | | |||||||||||| | |||||||||||||||||| | | || |
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| T |
8341447 |
taaaccaggaaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtac-acgatat |
8341349 |
T |
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| Q |
152 |
caagtagtaattagtacaaaac |
173 |
Q |
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|||||||||||||||||||||| |
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| T |
8341348 |
caagtagtaattagtacaaaac |
8341327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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