View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5080_low_3 (Length: 335)

Name: NF5080_low_3
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5080_low_3
NF5080_low_3
[»] chr4 (3 HSPs)
chr4 (64-327)||(24224490-24224753)
chr4 (214-307)||(11096893-11096986)
chr4 (17-52)||(24224437-24224472)
[»] chr2 (1 HSPs)
chr2 (221-288)||(42631524-42631591)
[»] chr3 (1 HSPs)
chr3 (212-256)||(814352-814396)
[»] chr6 (1 HSPs)
chr6 (277-320)||(3950609-3950652)
[»] chr5 (1 HSPs)
chr5 (229-295)||(17749814-17749880)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 64 - 327
Target Start/End: Original strand, 24224490 - 24224753
Alignment:
Q  64 aaactgaccaaaatggaatatattaccacaaaagattctccccaatacaaagagcgcacatgaagaaatccgagcgcattaagatacataagnnnnnnnn 163  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||            
T  24224490 aaaccgaccaaaatggaatatattaccacaaaagattctccccaatacaaagagcgcacatgaagaaatccgagtgcattaagatacataagaaaaacaa 24224589  T
Q  164 nnnnntatagaaaacttgagttagtagcttagctaatagataactcagtgttaagttattggtattctatgaaactctaactgtatttgttagtcacttt 263  Q
         |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  24224590 aaaaatatagaaaacttgagtcagtagcttagctaatagataactgagtgttgagttattggtattctatgaaacgctaactgtatttgttagtcacttt 24224689  T
Q  264 gttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattga 327  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  24224690 gttattttatcttattatctatattgttaacatggtattcaaagcatgatctaatcctcattga 24224753  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 11096893 - 11096986
Alignment:
Q  214 ttaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtatccaaag 307  Q
    ||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||| | ||  |||| |||||||||||||||| |||| ||||    
T  11096893 ttaaggtataggtattctatgaaactctaactgtcttttttagtctctttgttattctctccgattagctatattgttaacatgatatctaaag 11096986  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 24224437 - 24224472
Alignment:
Q  17 ataaatatcatattcaattcatcaacgtgacatata 52  Q
    ||||||||||||||||||||||||| ||||||||||    
T  24224437 ataaatatcatattcaattcatcaatgtgacatata 24224472  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 42631591 - 42631524
Alignment:
Q  221 attggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatatt 288  Q
    |||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| ||||||||||||    
T  42631591 attgatattctatgaaactctaacagtttttgttagtctctttgttattctatctgattatctatatt 42631524  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 814396 - 814352
Alignment:
Q  212 tgttaagttattggtattctatgaaactctaactgtatttgttag 256  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  814396 tgttaagctattggtattctatgaaactctagctgtctttgttag 814352  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 320
Target Start/End: Original strand, 3950609 - 3950652
Alignment:
Q  277 attatctatattgttaacatggtatccaaagcatgatttaatcc 320  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||    
T  3950609 attatctatattgttaacatggtatcgaaagcatggtttgatcc 3950652  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 17749814 - 17749880
Alignment:
Q  229 tctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaaca 295  Q
    ||||||||||  |||| || |||||||||| |||| ||||| | ||| |||||||||||||||||||    
T  17749814 tctatgaaaccttaaccgtttttgttagtctctttattattctctctgattatctatattgttaaca 17749880  T

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