View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5080_low_4 (Length: 296)

Name: NF5080_low_4
Description: NF5080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5080_low_4
NF5080_low_4
[»] chr1 (2 HSPs)
chr1 (21-288)||(9854047-9854314)
chr1 (213-259)||(16957653-16957699)
[»] chr2 (2 HSPs)
chr2 (208-288)||(23854342-23854422)
chr2 (208-248)||(25460933-25460973)
[»] chr7 (5 HSPs)
chr7 (208-288)||(18496878-18496958)
chr7 (203-288)||(14074157-14074242)
chr7 (203-288)||(14384185-14384270)
chr7 (209-260)||(18494888-18494939)
chr7 (230-286)||(2352437-2352493)
[»] chr6 (2 HSPs)
chr6 (209-287)||(17859244-17859322)
chr6 (208-284)||(22726929-22727005)
[»] chr5 (2 HSPs)
chr5 (209-259)||(25681827-25681877)
chr5 (208-256)||(17029206-17029254)
[»] chr4 (3 HSPs)
chr4 (211-288)||(7144013-7144090)
chr4 (217-281)||(22344580-22344644)
chr4 (208-251)||(5677130-5677173)
[»] scaffold0386 (1 HSPs)
scaffold0386 (212-287)||(10857-10932)
[»] chr3 (1 HSPs)
chr3 (209-287)||(13912588-13912666)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 9854047 - 9854314
Alignment:
Q  21 ctaggtgtcatactattgctccaatcccccatgtatcatttacttttacacaagaatcaatattggcttttacccaaccttgttgaggatttgcccaagc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9854047 ctaggtgtcatactattgctccaatcccccatgtatcatttacttttacacaagaatcaatattggcttttacccaaccttgttgaggatttgcccaagc 9854146  T
Q  121 tttaatcaggttgttcctattaccatttctgaccttgatattattgttgttcccttgtgcatgttggcgatccgctttgatttctttacgtcaaaggata 220  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9854147 tttaatcaggttgttcctattacaatttctgaccttgatattattgttgttcccttgtgcatgttggcgatccgctttgatttcttgacgtcaaaggata 9854246  T
Q  221 tgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattcttc 288  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  9854247 tgttcatgactttcataattgatttatggatgttatggagcaatttgacatctataggaatattcttc 9854314  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 16957653 - 16957699
Alignment:
Q  213 aaaggatatgttcatgactttcataattgatttatggaggttatgga 259  Q
    |||||| ||||||||| ||||||||||||| ||||| ||||||||||    
T  16957653 aaaggacatgttcatggctttcataattgagttatgaaggttatgga 16957699  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 23854422 - 23854342
Alignment:
Q  208 acgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattcttc 288  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||  ||| ||||||||||||||||||    
T  23854422 acgtcaaaggatatgtccatggctttcataattgagttatggaggttatggagcaatccgacgtctatagggatattcttc 23854342  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 25460933 - 25460973
Alignment:
Q  208 acgtcaaaggatatgttcatgactttcataattgatttatg 248  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
T  25460933 acgtcaaaggatatgtccatggctttcataattgagttatg 25460973  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 18496878 - 18496958
Alignment:
Q  208 acgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattcttc 288  Q
    |||||||||||||||| |||| |||||||| | || ||||||||||||||||||||| |||||||||||  ||||||||||    
T  18496878 acgtcaaaggatatgtccatggctttcatagtcgagttatggaggttatggagcaatctgacatctatatagatattcttc 18496958  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 14074157 - 14074242
Alignment:
Q  203 tctttacgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattcttc 288  Q
    |||| |||||||||||||  | |||| |||| |||||| | ||||||||||||||||| ||| |||||||| |||| |||||||||    
T  14074157 tcttgacgtcaaaggataaatccatggcttttataattaagttatggaggttatggagtaatctgacatctgtaggaatattcttc 14074242  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 14384185 - 14384270
Alignment:
Q  203 tctttacgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattcttc 288  Q
    |||| |||||||||||||  | |||| |||| |||||| | ||||||||||||||||| ||| |||||||| |||| |||||||||    
T  14384185 tcttgacgtcaaaggataaatccatggcttttataattaagttatggaggttatggagtaatctgacatctgtaggaatattcttc 14384270  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 18494939 - 18494888
Alignment:
Q  209 cgtcaaaggatatgttcatgactttcataattgatttatggaggttatggag 260  Q
    |||||||||| || |||||| |||| |||||||| |||||||||||||||||    
T  18494939 cgtcaaaggacatattcatggctttaataattgagttatggaggttatggag 18494888  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 2352493 - 2352437
Alignment:
Q  230 ctttcataattgatttatggaggttatggagcaatttgacatctatagggatattct 286  Q
    |||||||| || | |||||||| ||||||||||||  ||||||| ||||||||||||    
T  2352493 ctttcatattttagttatggagtttatggagcaatccgacatctgtagggatattct 2352437  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 17859322 - 17859244
Alignment:
Q  209 cgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattctt 287  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||  ||||||| | || ||||||||    
T  17859322 cgtcaaaggacatgttcatggctttcataattgagttatggaggttatggagtaatccgacatctgtcggaatattctt 17859244  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 22726929 - 22727005
Alignment:
Q  208 acgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatatt 284  Q
    |||||||||||||| | |||  ||||||||||| | |||||||| |||||||| |||  ||||||| |||| |||||    
T  22726929 acgtcaaaggatatttccattgctttcataatttagttatggagattatggagtaatccgacatctgtaggaatatt 22727005  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 25681827 - 25681877
Alignment:
Q  209 cgtcaaaggatatgttcatgactttcataattgatttatggaggttatgga 259  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  25681827 cgtcaaaggacatgttcatggctttcataattgagttatggaggttatgga 25681877  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 17029206 - 17029254
Alignment:
Q  208 acgtcaaaggatatgttcatgactttcataattgatttatggaggttat 256  Q
    |||||||||||||||| |||| |||||||||| || |||||||||||||    
T  17029206 acgtcaaaggatatgtccatggctttcataatcgagttatggaggttat 17029254  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 7144013 - 7144090
Alignment:
Q  211 tcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattcttc 288  Q
    |||||| ||||||  ||| ||||||||||||| | ||||||||||||||||||||  |||| | ||||||||||||||    
T  7144013 tcaaagaatatgtctatggctttcataattgagtcatggaggttatggagcaattcaacatatgtagggatattcttc 7144090  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 22344580 - 22344644
Alignment:
Q  217 gatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggat 281  Q
    ||||||| ||||||||||||||||   ||||||||||||||||||||| ||| || | |||||||    
T  22344580 gatatgtccatgactttcataattttgttatggaggttatggagcaatctgatatttgtagggat 22344644  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 5677130 - 5677173
Alignment:
Q  208 acgtcaaaggatatgttcatgactttcataattgatttatggag 251  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||    
T  5677130 acgtcaaaggatatgtccataactttcataattgagttatggag 5677173  T

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Target: scaffold0386 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 10932 - 10857
Alignment:
Q  212 caaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattctt 287  Q
    |||||||||||| |||  ||||||||||||| ||||||||||||||||| |||  ||||||| | || ||||||||    
T  10932 caaaggatatgtccatagctttcataattgagttatggaggttatggagtaatccgacatctgtgggaatattctt 10857  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 13912588 - 13912666
Alignment:
Q  209 cgtcaaaggatatgttcatgactttcataattgatttatggaggttatggagcaatttgacatctatagggatattctt 287  Q
    |||||||||| || |||||| ||||||||||||| |||| |||||||||| | |||  || || |||||| ||||||||    
T  13912588 cgtcaaaggacatattcatggctttcataattgacttatcgaggttatggtgtaatccgaaatatataggaatattctt 13912666  T

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