View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5081-Insertion-1 (Length: 920)
Name: NF5081-Insertion-1
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081-Insertion-1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 781; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Original strand, 48592996 - 48593919
Alignment:
| Q |
8 |
actttacggcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592996 |
actttacggcagcaaccgacactactgccatctccgtggaatgggcaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggt |
48593095 |
T |
|
| Q |
108 |
ggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatccc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593096 |
ggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatccc |
48593195 |
T |
|
| Q |
208 |
ccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatgg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593196 |
ccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatgg |
48593295 |
T |
|
| Q |
308 |
caagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593296 |
caagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgtt |
48593395 |
T |
|
| Q |
408 |
gccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593396 |
gccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaag |
48593495 |
T |
|
| Q |
508 |
atgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgta |
607 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593496 |
atgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgta |
48593595 |
T |
|
| Q |
608 |
ttccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctcta |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48593596 |
ttccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctcta |
48593691 |
T |
|
| Q |
708 |
ttcacaatcttaagcccttgctctcctatttctctttacttcttctc------------tcacacacctaaatctccttttatctatcttttctggcttt |
795 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48593692 |
ttcacaatcttaagcccttgctcttctatttctctttacttcttctctcacatcattgatcacacacctaaatctccttttatctatcttttttggcttt |
48593791 |
T |
|
| Q |
796 |
ctatctcatttccatatactcttcttataccacactggatatatgaaagtgtatttt-attcctttagcatttcatctg-ggttgtataaggcaa-ttag |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||| |||| |
|
|
| T |
48593792 |
ctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaattcctttagcatttcatctgtgtttgtataatgcaatttag |
48593891 |
T |
|
| Q |
893 |
agattgaacaaacaattgcactgggatt |
920 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |
|
|
| T |
48593892 |
agattgaacaaacatttgcattgggatt |
48593919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Original strand, 48597607 - 48598530
Alignment:
| Q |
8 |
actttacggcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597607 |
actttacggcagcaaccgacactactgccatctccgtggaatgggcaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggt |
48597706 |
T |
|
| Q |
108 |
ggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatccc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597707 |
ggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatccc |
48597806 |
T |
|
| Q |
208 |
ccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatgg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597807 |
ccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatgg |
48597906 |
T |
|
| Q |
308 |
caagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597907 |
caagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgtt |
48598006 |
T |
|
| Q |
408 |
gccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48598007 |
gccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaag |
48598106 |
T |
|
| Q |
508 |
atgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgta |
607 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48598107 |
atgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgta |
48598206 |
T |
|
| Q |
608 |
ttccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctcta |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48598207 |
ttccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctcta |
48598302 |
T |
|
| Q |
708 |
ttcacaatcttaagcccttgctctcctatttctctttacttcttctc------------tcacacacctaaatctccttttatctatcttttctggcttt |
795 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48598303 |
ttcacaatcttaagcccttgctcttctatttctctttacttcttctctcacatcattgatcacacacctaaatctccttttatctatcttttttggcttt |
48598402 |
T |
|
| Q |
796 |
ctatctcatttccatatactcttcttataccacactggatatatgaaagtgtatttt-attcctttagcatttcatctg-ggttgtataaggcaa-ttag |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||| |||| |
|
|
| T |
48598403 |
ctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaattcctttagcatttcatctgtgtttgtataatgcaatttag |
48598502 |
T |
|
| Q |
893 |
agattgaacaaacaattgcactgggatt |
920 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |
|
|
| T |
48598503 |
agattgaacaaacatttgcattgggatt |
48598530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 668
Target Start/End: Complemental strand, 23231254 - 23230593
Alignment:
| Q |
16 |
gcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatag |
115 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || | || |
|
|
| T |
23231254 |
gcagctaccgacactactgccatctcagtcgaatgggcaatatcagaactgtttaacaatccaagggtgttgaaaaaagctcaagaggaggtagagagag |
23231155 |
T |
|
| Q |
116 |
ttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgatacc |
215 |
Q |
| |
|
|| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
23231154 |
ttgtaggaaaggaaagattagtgtgtgaagaagacagtccaaaccttccttatatacatgccatcataaaagaaaccatgaggcttcaccctccgatacc |
23231055 |
T |
|
| Q |
216 |
gatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggac |
315 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
23231054 |
gatgattatgaggaaaggaatggaagattgtgttgttgatggtaaaatggttccaaaaggatcaatggtttgtgtgaacatttgggctatgggaagagac |
23230955 |
T |
|
| Q |
316 |
ccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaag---------atattgacatgaaagggcaccagtttgagttgt |
406 |
Q |
| |
|
| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |||| || ||||||||||| || | ||||||| |
|
|
| T |
23230954 |
caaaagatatgggaaaatgcattagattttaagccagaaaggtttttagaaaacaaagaaggaaacaatatagatatgaaagggcatcactatgagttgc |
23230855 |
T |
|
| Q |
407 |
tgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaa |
506 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||||||||| |||||| | || ||||| ||||| ||| | || |||||||| ||||||||||||||||| |
|
|
| T |
23230854 |
taccatttggttctggaaggagaggctgccctggtatgccgttggccatgcgccaattgcccaccgtagtcggggctttggtgcaatgctttgagtggaa |
23230755 |
T |
|
| Q |
507 |
gatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgt |
606 |
Q |
| |
|
|||||||| || ||| |||| || ||||||| |||| | |||||||||||| | ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
23230754 |
aatgcttgactccgaaggtaaaatattagatcgaggcaaaacaatcgatatggatgaaagacctggattgaccgctcctagagccaatgatcttatttgt |
23230655 |
T |
|
| Q |
607 |
attccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtga |
668 |
Q |
| |
|
||||| || ||||| ||||||| ||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
23230654 |
attccgatttcaagaatgaacccaaatacttttcttcagcttttgtaaaagggaatttgtga |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 31 - 626
Target Start/End: Complemental strand, 23223494 - 23222890
Alignment:
| Q |
31 |
actgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaa |
130 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||| |||||||||| || ||||| ||||||||||| |||||||| | | | | | ||||||| |
|
|
| T |
23223494 |
actgccatttcattggaatggacaatagcagaactgttcaacaatccaatagtactgaagaaagcacaagaagaggtggagagaataatagggaaggaaa |
23223395 |
T |
|
| Q |
131 |
gacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaa |
230 |
Q |
| |
|
|||| || ||||||| |||| ||||||||||||||||||||| || || |||||||||||| |||||||||| || || ||||||||||| ||||| |
|
|
| T |
23223394 |
gactagtatgtgaagcagacattccaaaccttccttatatacaagccattataaaagaaacattgaggcttcacccaccactaccgatgattgctaggaa |
23223295 |
T |
|
| Q |
231 |
gggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaa |
330 |
Q |
| |
|
|||| ||||||||||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| | ||||||| |||||| ||| || |
|
|
| T |
23223294 |
aggaacaaaagattgtgtggtcgatgggaaaatgatcaaaaaaggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaa |
23223195 |
T |
|
| Q |
331 |
aacccattagagtttagaccagaaaggtttttagaa-----aacaaa----gatattgacatgaaagggcaccagtttgagttgttgccatttggttctg |
421 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||| || | | || || || || |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23223194 |
aacccactagagtttaggcctgaaaggtttttagaatctggaaaagagagtgagatagatatcaaagggcatgactttgagttgttgccatttggttctg |
23223095 |
T |
|
| Q |
422 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
521 |
Q |
| |
|
||||||||||||| || || |||||||||||| | || |||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| || || |
|
|
| T |
23223094 |
gaaggagaggttgcccggggatgcctttggccatgcgcgaattgccgactgtgattggagctttagtacaatgctttgagtggaagatgcttgactctga |
23222995 |
T |
|
| Q |
522 |
atgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
621 |
Q |
| |
|
| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
23222994 |
aggtaaattattagatcaaggcaaaacaatcgatatggatgaacggcctggattgactgctcctagagccaatgatcttttttgcattccagttgcaaga |
23222895 |
T |
|
| Q |
622 |
ttgaa |
626 |
Q |
| |
|
||||| |
|
|
| T |
23222894 |
ttgaa |
23222890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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