View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081-Insertion-2 (Length: 633)
Name: NF5081-Insertion-2
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 40 - 457
Target Start/End: Complemental strand, 42697796 - 42697374
Alignment:
| Q |
40 |
aggagtaagtcatcagaccaattccataaacactcttacagtagtacatttaagccactgataagaataagactccttaggtcaatttgggaggtaggca |
139 |
Q |
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| T |
42697796 |
aggagtaagtcatcagaccaattccataaacactcttacagtagtacatttaagccactgataagaataagactccttaggtcaatttgggaggtaggca |
42697697 |
T |
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| Q |
140 |
cgacattacattggtgaaactctaggggactctgtcccatcggatagtagcgaagttactcgattgtgttggtagcttgtaagtaaagatagtgttcgtg |
239 |
Q |
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| T |
42697696 |
cgacattacattggtgaaattctaggggactctgtcccatcggatagtagtgaagttactcgattgtgttggtagcttgtaagtaaagatagtgttcgtg |
42697597 |
T |
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| Q |
240 |
gctttttaactgggaccaataaattgtgcaccgtcccattcattcattcataattcatcataatataatatgaataatgcatcagtt-----aattaaaa |
334 |
Q |
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| T |
42697596 |
gctttttaactgggaccaataaattgtgcaccgtcccattcattcattcataattcatcataatataatatgaataatgcatcaattaattaaattaaaa |
42697497 |
T |
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| Q |
335 |
tccgtttgttggatccaaaattacactactttcttttaccggagacaatgataaactacttgtagtatcaagtgaattccaccccatagttttccattat |
434 |
Q |
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| T |
42697496 |
tccgtttgttggatccaaaattacactactttcttttaccggagacaatgataaactacttgtagtatcaagtgaattccaccccatagttttccattat |
42697397 |
T |
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| Q |
435 |
attcttaacttgacccaccgtct |
457 |
Q |
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| T |
42697396 |
attcttaacttgacccaccgtct |
42697374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 454 - 633
Target Start/End: Complemental strand, 42697324 - 42697147
Alignment:
| Q |
454 |
gtcttgaatcaacttgacttgagaatgtattattagtagaagacattagacacatcccttgttactagcttgcctaactacacacactaacgctatgtgg |
553 |
Q |
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| T |
42697324 |
gtcttgaatcaacttgacttgagaatgtattattagtagaagacattagacacatcccttgttactagcttgcctaactacacac--taacgctatgtgg |
42697227 |
T |
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| Q |
554 |
aacctttcctatatttcatggggacaatgattgaggccccggaaagtttctattgcactcttctgttatattatattttt |
633 |
Q |
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| T |
42697226 |
aacctttcctatatttcatggggacgatgattgaggccccggaaagtttctattgcactcttctgttatattatattttt |
42697147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 191 - 453
Target Start/End: Complemental strand, 42702925 - 42702669
Alignment:
| Q |
191 |
gaagttactcgattgtgttggtagctt---gtaagtaaagatagtgttcgtggctttttaactgggaccaataaattgtgcaccgtcccattcattcatt |
287 |
Q |
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| T |
42702925 |
gaagttactggattgttttggtagctactagtaggtaaagatagtgcccgtgactttttaactgggaccaatgaattgtgcaccgtcccattcat----- |
42702831 |
T |
|
| Q |
288 |
cataattcatcataatataatatgaataatgcatcagttaattaaaatccgtttgttggatccaaaattac-actactttcttttaccggagacaatgat |
386 |
Q |
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| T |
42702830 |
--------actatagtataatatgcataatgcattagttaaataaaatctgtttgttggatccaaaattactagtacttttcattgccggtgacaatgat |
42702739 |
T |
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| Q |
387 |
aaactacttg---tagtatcaagtgaattccaccccatagttttccattatattcttaacttgacccacc |
453 |
Q |
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| T |
42702738 |
aaactacttgtcctataataatgtcaatttcaacctatagcttagcattatattcttaacttgacccacc |
42702669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 601
Target Start/End: Complemental strand, 42702615 - 42702462
Alignment:
| Q |
454 |
gtcttgaatcaacttgacttgagaatgtattattagtagaagacattagacacatcccttgttactagcttgcct----aacta--cacacactaacgct |
547 |
Q |
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| T |
42702615 |
gtcttgaattagcatgtcttgagaattcatcattagtacaagacattagacacatcccatgttaccagcttggctactaaattaaccacacactaatgtt |
42702516 |
T |
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| Q |
548 |
atgtggaacctttcctatatttcatggggacaatgattgaggccccggaaagtt |
601 |
Q |
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|||| |||||| |||||| |||||||||||||||||||| || ||||||| |
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| T |
42702515 |
gcgtggggcctttcttatattctatggggacaatgattgaggcacccgaaagtt |
42702462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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