View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081-Insertion-4 (Length: 587)
Name: NF5081-Insertion-4
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Original strand, 11616334 - 11616913
Alignment:
| Q |
8 |
aaggcttggtcaatcattcagctcttcaagggaaacagtgagtgctggaagacacgaaatcgaaatcattcctgatatagaattgaaaagaggcgaaatc |
107 |
Q |
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| T |
11616334 |
aaggcttggtcaatcattcagttcttcaagggaaacagtgagtgttggaagacacgaaatcgaaatcattcctgatatagaattgaaacgaggcaaaatc |
11616433 |
T |
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| Q |
108 |
aaatactgtttctctgatggaatagggaaaatatcgtatgaattggctcaagaagttgctaaaaattgtggttgcaaggatcatataattccatctgcat |
207 |
Q |
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| T |
11616434 |
aaatactgtttctctgatggaatagggaaaatatcgtatgaattggctcaagaagttgctgaaaaatgtggttgcaaggatcatataattccatctgcat |
11616533 |
T |
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| Q |
208 |
ttcaaatcagatatggtggatacaaaggtgttgtagctgttgatcctaactcatcaactaaactttccttgagaaatagcatgtgcaagtttaagtcaga |
307 |
Q |
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| T |
11616534 |
ttcaaatcagatatggtggatacaaaggtgttgttgctgttgatcctaactcatcaactaaactttccttgagaaatagcatgtgcaagtttaagtcaga |
11616633 |
T |
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| Q |
308 |
aaatacaaaactagatgtattgtcatggagcaaaaacaaaccgtgctttcttaaccgtcaagtaatcgttctgttgtccacactcggtgtcaaggatcga |
407 |
Q |
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| T |
11616634 |
aaacacgaaactagatgtattgtcatggagcaaaaacaaaccgtgctttcttaaccgtcaagtaattgttctgttgtccacactcggtgtcaaggatcga |
11616733 |
T |
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| Q |
408 |
gtctttaaaaggaagcaaagggagattgttaataaactcaaaatgatatcaagaaaaccattcaatgcactagacatgatgtcacaaggaacaattacag |
507 |
Q |
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| T |
11616734 |
atctttaaaaggaagcaaagggagattgttaataaactcaaaatgatatcaagaaaaccattcaatgcactagacatgatgtcacaaggaacaattacag |
11616833 |
T |
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| Q |
508 |
acatgttaagggaaatgattatttgtggattcaatccgacaaatgaaccttttctttccgtgatgttgagaacaatatgt |
587 |
Q |
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| T |
11616834 |
acatgttaagggaaatgattatttgtggattcaatccgacaaatgaaccttttctttccatgatgttgagaacaatatgt |
11616913 |
T |
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