View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5081-Insertion-5 (Length: 465)

Name: NF5081-Insertion-5
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5081-Insertion-5
NF5081-Insertion-5
[»] chr1 (9 HSPs)
chr1 (8-277)||(43561813-43562085)
chr1 (322-465)||(43566149-43566292)
chr1 (322-462)||(43473958-43474098)
chr1 (121-184)||(47364017-47364079)
chr1 (119-167)||(14758627-14758675)
chr1 (121-159)||(48947274-48947312)
chr1 (122-167)||(42469317-42469362)
chr1 (133-165)||(31889246-31889278)
chr1 (119-167)||(44584040-44584088)
[»] chr3 (3 HSPs)
chr3 (121-189)||(1600521-1600589)
chr3 (130-184)||(24832302-24832356)
chr3 (121-166)||(26143168-26143214)
[»] scaffold0268 (1 HSPs)
scaffold0268 (121-171)||(20234-20284)
[»] chr5 (1 HSPs)
chr5 (121-165)||(5758632-5758676)
[»] chr8 (3 HSPs)
chr8 (99-162)||(41646597-41646660)
chr8 (120-166)||(23984323-23984369)
chr8 (121-191)||(39691080-39691150)
[»] chr4 (2 HSPs)
chr4 (119-165)||(19652701-19652747)
chr4 (121-165)||(41370160-41370204)
[»] chr7 (2 HSPs)
chr7 (110-167)||(6771896-6771953)
chr7 (119-167)||(20397459-20397507)
[»] chr2 (2 HSPs)
chr2 (108-165)||(21004768-21004825)
chr2 (122-159)||(42342488-42342525)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 43561813 - 43562085
Alignment:
Q  8 gatataattgtttttctctctcttgctaaggagtgttttgaaacannnnnnnaaggattacaaattaaaaaagtattcattnnnnnnnncatcaattttt 107  Q
    |||||||||||||||||||||||||||||  ||||||||||||||       |||||||||||||||||||||||||||||         |||||||| |    
T  43561813 gatataattgtttttctctctcttgctaacaagtgttttgaaacatttttt-aaggattacaaattaaaaaagtattcattaaaaaaaaaatcaatttct 43561911  T
Q  108 attatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagcgttttccatgttttcta----ta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||| |||||||||    ||    
T  43561912 attatatagagtgcacaaattttcataaaaacttaccatttaagatccttaaaaagtgtcatgagacactcgttagtgttttccttgttttctatacgta 43562011  T
Q  204 cgagggtgtaaacacttgtggtgcaaaacacacccattggggtttgaactgatgactaacatcacacattccaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43562012 cgagggtgtaaacacttgtggtgcaaaacacacccattggggtttgaactgatgactaacatcacacattccaa 43562085  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 322 - 465
Target Start/End: Original strand, 43566149 - 43566292
Alignment:
Q  322 ggaacggcgccgatgctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt 421  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43566149 ggaacggcgccgatgctttcgaccagaattccatgcaaatccactattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt 43566248  T
Q  422 ttctcttgttcttcaagagagaaatcatgtaacttcattctgta 465  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  43566249 ttctcttgttcttcaagggagaaatcatttaacttcattctgta 43566292  T

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Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 322 - 462
Target Start/End: Complemental strand, 43474098 - 43473958
Alignment:
Q  322 ggaacggcgccgatgctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt 421  Q
    |||||||||| || ||||| |||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43474098 ggaacggcgcagacgcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtctaaggcgatgaagttgaaaacggtttgt 43473999  T
Q  422 ttctcttgttcttcaagagagaaatcatgtaacttcattct 462  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  43473998 ttctcttcttcttcaagagagaaatcatgtaacttcattct 43473958  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 47364079 - 47364017
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagc 184  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||| | | ||||||||||||    
T  47364079 cacaaattttcataaaaatttatcatttaaaattcttaaagagtgtcct-aaacacttgttagc 47364017  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 14758627 - 14758675
Alignment:
Q  119 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 167  Q
    ||||||| |||||||||||| |||| ||||||| |||||||||||||||    
T  14758627 tgcacaatttttcataaaaatttactatttaaagtccttaaagagtgtc 14758675  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 48947274 - 48947312
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaa 159  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  48947274 cacaaattttcataaaaagttaccatttaaagtccttaa 48947312  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 42469317 - 42469362
Alignment:
Q  122 acaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 167  Q
    |||||||||||||||| ||||||||| || ||||||||| ||||||    
T  42469317 acaaattttcataaaatcttaccattaaagatccttaaaaagtgtc 42469362  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 31889246 - 31889278
Alignment:
Q  133 taaaaacttaccatttaaaatccttaaagagtg 165  Q
    ||||||||||||||||||||| |||||||||||    
T  31889246 taaaaacttaccatttaaaatgcttaaagagtg 31889278  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 44584088 - 44584040
Alignment:
Q  119 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 167  Q
    ||||||| ||||||||||||||||| || ||||||| |||| |||||||    
T  44584088 tgcacaagttttcataaaaacttactatctaaaatctttaatgagtgtc 44584040  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 1600589 - 1600521
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagcgtttt 189  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||| ||| | ||| |||||||||||    
T  1600589 cacaaattttcataaaagtttaccatttaagatccttaaagagtgtcctgaaatactcgttagcgtttt 1600521  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 24832356 - 24832302
Alignment:
Q  130 tcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagc 184  Q
    ||||||||| |||| |||||||||| |||||||||||||||| | | ||||||||    
T  24832356 tcataaaaatttactatttaaaatctttaaagagtgtcatgatatatttgttagc 24832302  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 26143168 - 26143214
Alignment:
Q  121 cacaaattttcat-aaaaacttaccatttaaaatccttaaagagtgt 166  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||    
T  26143168 cacaaattttcattaaaaacttaccatttaaaatgtttaaagagtgt 26143214  T

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Target: scaffold0268 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 20284 - 20234
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatga 171  Q
    ||||| |||||||||||||||| |||||||| | |||||||||||||||||    
T  20284 cacaacttttcataaaaacttatcatttaaagtgcttaaagagtgtcatga 20234  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 5758632 - 5758676
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaaagagtg 165  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  5758632 cacaaactttcataaaaacttaccatttaaagtccttaaaaagtg 5758676  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 41646597 - 41646660
Alignment:
Q  99 tcaatttttattatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaaga 162  Q
    ||||||||||||  || || ||||||| ||||||||||||||||| || |||| ||||||||||    
T  41646597 tcaatttttattgaattgaatgcacaagttttcataaaaacttactatctaaagtccttaaaga 41646660  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 23984323 - 23984369
Alignment:
Q  120 gcacaaattttcataaaaacttaccatttaaaatccttaaagagtgt 166  Q
    |||||| |||||||||||| |||| ||||||||||||||| ||||||    
T  23984323 gcacaatttttcataaaaatttactatttaaaatccttaaggagtgt 23984369  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 39691150 - 39691080
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagcgttttcc 191  Q
    |||||||||||||||||| |||| |||||| ||||||||||| |  |  ||||||||||||| | ||||||    
T  39691150 cacaaattttcataaaaaattactatttaagatccttaaagaatacccggagacacttgttaacattttcc 39691080  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 19652701 - 19652747
Alignment:
Q  119 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtg 165  Q
    ||||||||||||||||||||||||| || ||||||  ||||||||||    
T  19652701 tgcacaaattttcataaaaacttactatctaaaatatttaaagagtg 19652747  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 41370204 - 41370160
Alignment:
Q  121 cacaaattttcataaaaacttaccatttaaaatccttaaagagtg 165  Q
    ||||||||||||||||||||||| ||| ||| |||||||| ||||    
T  41370204 cacaaattttcataaaaacttactattcaaagtccttaaaaagtg 41370160  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 6771896 - 6771953
Alignment:
Q  110 tatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 167  Q
    ||||| || ||||||| ||| |||||||| |||| ||||||| |||||||||||||||    
T  6771896 tatattgaatgcacaattttccataaaaatttactatttaaagtccttaaagagtgtc 6771953  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 20397507 - 20397459
Alignment:
Q  119 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 167  Q
    |||||| ||||||||||||  |||| |||| ||||||||||||||||||    
T  20397507 tgcacacattttcataaaatattactattttaaatccttaaagagtgtc 20397459  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 21004768 - 21004825
Alignment:
Q  108 attatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaagagtg 165  Q
    ||||||| || | |||||||||||| ||||| |||||||||||||  |||||||||||    
T  21004768 attatattgattacacaaattttcaaaaaaaattaccatttaaaagtcttaaagagtg 21004825  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 42342525 - 42342488
Alignment:
Q  122 acaaattttcataaaaacttaccatttaaaatccttaa 159  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  42342525 acaaattttcataaaaagttaccatttaatatccttaa 42342488  T

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