View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_high_12 (Length: 319)
Name: NF5081_high_12
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 303
Target Start/End: Complemental strand, 4612009 - 4611710
Alignment:
| Q |
4 |
aaaaatgaaaaatattcttaaatctttttgggaattagaaatttatattgtatataacaaagaatctttggtactgattttagggtataaatattggtta |
103 |
Q |
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| T |
4612009 |
aaaaatgaaaaatattcttaaatctttttgggaattagaaatttatattgtatatatcaaagaatctttggtactgattttagggtataaatattggtta |
4611910 |
T |
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| Q |
104 |
ctagcatgataaaagacaagggaaaggaacatatgtaaatatcttatagtgtcattatcgttggattcgttgcaacttgatgctatcacatttcacgcaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4611909 |
ctagcatgataaaagacaagggaaaggaacatatgtaaatatcttatagtgtcataatcgttggattcgttgcaacttgatgctatcacatttcacgcaa |
4611810 |
T |
|
| Q |
204 |
ttttgagttattcttccaacttgaagatgatcactagctagctagcttgtagttactgccaatccatcacacaattagctggcaatatcaatagtaaatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4611809 |
ttttgagttattcttccaacttgaagatgatcactagctagctagcttgtggttactgccaagccatcacacaattagctggcaatatcaatagtaaatt |
4611710 |
T |
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