View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_high_13 (Length: 318)
Name: NF5081_high_13
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 8203221 - 8203508
Alignment:
| Q |
13 |
aatatcaacaaggctaatgcatccagctttatgaatcgcttgaagtgtctgagacaatgcctcggtcatggtaggttttttctctttcagtttttcctat |
112 |
Q |
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| T |
8203221 |
aatatcaacaaggctaatgcatccagctttatgaatcgcttgaagagtctgagacaatgcctcggtcatggtaggttttttctctttcagtttttcctat |
8203320 |
T |
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| Q |
113 |
tcaagaaataaatatgttaagtaaacagcatgtaaacgacaaaataactatttacgtaacaaacacatccatgaatggtagatgtataattcccctatta |
212 |
Q |
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| T |
8203321 |
tcaagaaataaatatgttaagtagacatcatgtaaacaacaaaataactatttacgtaacaaacacatccatgaatggtagatgtataattcccctatta |
8203420 |
T |
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| Q |
213 |
ccacctctaaaggccttcaagacagaagacaacgaactctctcaaagccaaaactaaatccaacttggtaatgcatggggggatgtaa |
300 |
Q |
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| T |
8203421 |
ccacctctaaaggccttcaagacagaagacaacgaactctctcaaagccaaaaccaaatccaacttggtaatgcatggggggatgtaa |
8203508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 42360352 - 42360456
Alignment:
| Q |
16 |
atcaacaaggctaatgcatccagctttatgaatcgcttgaagtgtctgagacaatgcctcggtcatggtaggttttttctctttcagtttttcctattca |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
42360352 |
atcaacaagactaatgcatccagctttatgaatcgcttgaagagtctgagacaatgcctcggtcatggtaggttttttctctttcaatttttcctattaa |
42360451 |
T |
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| Q |
116 |
agaaa |
120 |
Q |
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||||| |
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| T |
42360452 |
agaaa |
42360456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 299
Target Start/End: Original strand, 42360507 - 42360660
Alignment:
| Q |
149 |
cgacaaaataactatttacgt-aacaaacacatccatgaatggtagatgtataattcccctattaccacctctaaaggccttcaagacagaagacaacga |
247 |
Q |
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||||||||||||||||||| | |||||| || |||||||| | |||| | ||||||||||| ||||||||||||||||| |||||||||||||||||| | |
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| T |
42360507 |
cgacaaaataactatttactttaacaaaaacttccatgaacgatagaagcataattcccctgttaccacctctaaaggcgttcaagacagaagacaacca |
42360606 |
T |
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| Q |
248 |
actctctcaaagcc-aaaactaaatccaacttggtaatgcatg-gggggatgta |
299 |
Q |
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||| |||||||||| ||||| | || |||| |||||||||||| |||||||||| |
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| T |
42360607 |
actttctcaaagccaaaaacaagattcaacatggtaatgcatgtgggggatgta |
42360660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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