View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_high_18 (Length: 264)
Name: NF5081_high_18
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_high_18 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: scaffold0100 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 49976 - 49735
Alignment:
| Q |
13 |
aatatcacatgaaactttgataatttgattatta------catgaaatcatgattcaaatacttggatgtacacgtttggttttgtgaattgtgattatt |
106 |
Q |
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| T |
49976 |
aatatcacaggaaactttgataatttgattattattattacatgaaatcatgattcaaatacttggatgtacacgtttggttttgtgaattgtgattatt |
49877 |
T |
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| Q |
107 |
ccaaacaatactctaatttaatttactttggattttaatatgattgaataaaactataagactaagacatgaaagttgtcacgtttaattaaatttcata |
206 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
49876 |
ccaaacaatactctaatttaatttactatggattttaatatgattgaataaaactataagactaagacatgagagttgtcacgtttaattaaattccata |
49777 |
T |
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| Q |
207 |
ggtataaaaatgttgtaataatgtttatgaatgaattatgtg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
49776 |
ggtataaaaatgttgtaataatgtttatgaatgaattatgtg |
49735 |
T |
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