View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5081_high_24 (Length: 249)
Name: NF5081_high_24
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 32243155 - 32243377
Alignment:
| Q |
11 |
cagagaccaattttcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32243155 |
cagagaccaattttcttcttgggagcaaccagtataacttcttgaagcatgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagg |
32243254 |
T |
|
| Q |
111 |
gcaccgacctatgtacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtg |
210 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32243255 |
gcaccgacctatgtacaccacaatcaacggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctattggtgaataacaatgtg |
32243354 |
T |
|
| Q |
211 |
tcccttgccctttggggccatgt |
233 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32243355 |
tcccttgccctttggggccatgt |
32243377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 32248236 - 32248458
Alignment:
| Q |
11 |
cagagaccaattttcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagg |
110 |
Q |
| |
|
||||||||||||| |||| ||||||||| || ||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32248236 |
cagagaccaatttccttcctgggagcaatcagtataacttcttaaagcgtgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagg |
32248335 |
T |
|
| Q |
111 |
gcaccgacctatgtacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtg |
210 |
Q |
| |
|
||||||||| ||||||||||||| |||| | | ||||| | |||||||| | ||||| | |||||| |||||||||| |||||||||||| |||| |
|
|
| T |
32248336 |
gcaccgacccatgtacacaacaagcaatgaatttagggatgctgcgttaagaggaaagatggttgagcacctggaacctctattggtgaataaccatgta |
32248435 |
T |
|
| Q |
211 |
tcccttgccctttggggccatgt |
233 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
32248436 |
acccttgccctttggggtcatgt |
32248458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University