View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5081_high_4 (Length: 653)

Name: NF5081_high_4
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5081_high_4
NF5081_high_4
[»] chr8 (1 HSPs)
chr8 (1-641)||(4611971-4612625)


Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Original strand, 4611971 - 4612625
Alignment:
Q  1 tctaattcacaaaaagatttaagaatatttatcattttt-ataagtaacgatggttttgcagaaacat----------ctttagggatttcataataaat 89  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||          ||||||||||||||||||||||    
T  4611971 tctaattcccaaaaagatttaagaatatttttcattttttataagtaacgatgtttttgcaaaaacatgtaaaaacatctttagggatttcataataaat 4612070  T
Q  90 aacaaatacattatagtatcaattttactttttactaaatgaattgtannnnnnnn-atttgtacggaattgttggcaaatatttctttatgaattgtta 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||    
T  4612071 aacaaatacattatagtatcaattttactttttactaaatgaattgtatttttttttatttgtacggaattgttgacaaatatttctttatgaattgtta 4612170  T
Q  189 tatattccaacaacctttgacatatcatgcctatttcgttcatactgttcttttccttttaatctcttccatgttacataatcatatagcacatatgatt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4612171 tatattccaacaacctttgacatatcatgcctatttcgttcatactgtttttttccttttaatctcttccatgttgcataatcatatagcacatatgatt 4612270  T
Q  289 atatttggtttctagtagacatatacacttttaaaactaaaagacaatcatatcgatattttgaaaacatatatgtacattgtacactactagaattact 388  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4612271 atatttggtttctagtagacatatacatttttaaaactaaaagacaatcatatcgttattttgaaaacatatatgtacattgtacactactagaattact 4612370  T
Q  389 atttacgcaaagtcactaattaatgattactgcaaaagaac-aaaaccctttgttaaggaacaagactcaattgtggatgtcatgagcacatatatgttt 487  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4612371 atttacgcaaagtcactaattaatgattactgcaaaagaacaaaaaccctttgttaaggaacaagactcaattgtggatgtcatgagcacatatatgttt 4612470  T
Q  488 ttagcaagaagacatgaaaatcattagctaactcaattttaaacaaagattcaaatttgaacatttgtcaagaggcattaattcagtga-tttaagttta 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4612471 ttagcaagaagacatgaaaatcattagctaactcaattttaaacaaagattcaaatttgaacatttgtcaagaggcattaattcagtgattttaagttta 4612570  T
Q  587 actttttaactgttaggataaattaaatcttgtttgaaacagttgtagaataatt 641  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4612571 actttttaacttttaggataaattaaatcttgtttgaaacagttgtagaataatt 4612625  T

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