View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_high_9 (Length: 399)
Name: NF5081_high_9
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 38841140 - 38841522
Alignment:
| Q |
1 |
aaaaaatcaaataaa-tcaacaaatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggt |
99 |
Q |
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| T |
38841140 |
aaaaaatcaaaaaaaatcaacaaatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggt |
38841239 |
T |
|
| Q |
100 |
gagcttagcaccataaccatttctcccaccagtagttttcttcacattataatcatagttaaggtgaccaaagaacaattcaggaacataaacattctct |
199 |
Q |
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| T |
38841240 |
gagcttagcaccataaccatttctcccaccagtagttttcttcacattataatcatagttaaggtgaccaaagaacaattcaggaacataaacattctct |
38841339 |
T |
|
| Q |
200 |
tccttatgaagccctactggaacactgtcaccattattataaactgaaactgtattcacttccggttcgattgtaactttgagtgaatccatggacggat |
299 |
Q |
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| T |
38841340 |
tccttatgaagccctactggaacaccttcaccattattataaactgaaactgtattcccttccggttcgattgtaactttgagcgaatccatggacggat |
38841439 |
T |
|
| Q |
300 |
ctctcttggtggcgtcaaggagaatctcatcgaagattttgtaaagtccaggaacgtaggaaacagaacggtgaaccatttct |
382 |
Q |
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| T |
38841440 |
ctctcttggtggcgtcaaggagaatctcgtcaaagattttgtaaagtccaggaacgtaggaaacagaacggtgaaccatttct |
38841522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 9877231 - 9877523
Alignment:
| Q |
22 |
aatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcaccataaccattt |
121 |
Q |
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| T |
9877231 |
aatcactacctgcttatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgttt |
9877330 |
T |
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| Q |
122 |
ctcccaccagtagttttcttcacattataatcatagtt------------aaggtgaccaaagaacaattcaggaacataaacattctcttccttatgaa |
209 |
Q |
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|| ||||||||||||||||||||||||| ||||| || ||| |||||||| | ||| || ||||||||||| |||||||| | ||||| |
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| T |
9877331 |
cttccaccagtagttttcttcacattatcgtcataattactactcgtaagaagatgaccaaaaatcaactccggaacataaaccttctcttcttgatgaa |
9877430 |
T |
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| Q |
210 |
gccctactggaacactgtcaccattattataaactgaaactgtattcacttccggttcgattgtaactttgagtgaatccatggacggatctc |
302 |
Q |
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| T |
9877431 |
tctcaaccggaacaccgtcaccgttattgtaaacagaaaccgtattcgcctcaggatcgatcgttactttcaacgaatccatggatggatctc |
9877523 |
T |
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