View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_1 (Length: 959)
Name: NF5081_low_1
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 512 - 880
Target Start/End: Complemental strand, 25932876 - 25932522
Alignment:
| Q |
512 |
ttaggggtgagtgatttgggttgaggaagacaaggtaaaagcttagacaagtggcacaatttggtgcattcaagccatcattgtacggcccagatttgtt |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25932876 |
ttaggggtgagtgatttgggttgaggaagacaaggtaaaagcttagacaagtggcacaatttggtgcattcaagccatcattgtacggcccagatttgtt |
25932777 |
T |
|
| Q |
612 |
caatgagttttattaagtac---tagtactnnnnnnntctcatatttgataacattttaagcagtttcattataggctccaattttattttattttggca |
708 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25932776 |
caatgagttttattaagtacaactagtactaaaaaattctcatatttgatatcattttaagcagtttcattataggctccaattttattttattttggca |
25932677 |
T |
|
| Q |
709 |
aaggattacagacaccaaatttaactaaaactgattagtcatggaatttacattttcaagtttgnnnnnnngatggtgtgtggtaggtttttctcaatcc |
808 |
Q |
| |
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| T |
25932676 |
aa-----------------tttaactaaaactgattagtcatggaatttacattttcaagtttgaaaaaaagatggtgtgtggtaggtttttctcaatcc |
25932594 |
T |
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| Q |
809 |
atttatgtttctttttgggcaagtttaaatcttacccattctcaagtctttagaaaccatttattgaatcat |
880 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25932593 |
atttaagtttctttttgggcaagtttaaatcttacccattctcaagtctttagaaaccatttattgaatcat |
25932522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 199 - 484
Target Start/End: Complemental strand, 25933329 - 25933053
Alignment:
| Q |
199 |
aaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccatta |
298 |
Q |
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||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25933329 |
aaggagaaagaagcactgacttgggtgacgaacagttgctctgacagtgtaaccacattgaaggagaaacttaacaatccatgaagcaataaaaccatta |
25933230 |
T |
|
| Q |
299 |
gcacctgtcacacacaccacctttccttctccactcatcatccttctacgattgcttgtaattgaaattatccctataaactatgtcattaaaaaatgta |
398 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25933229 |
gcacctgtcacacacaccacttttccttccccactcatcatcct---------gcttgtaattgaaattatccctataaactatgccattaaaaaatgta |
25933139 |
T |
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| Q |
399 |
ggtgattcaacaattattcgttgccataatcttatctaatacgaaaaagaaaatgaaacttttactgattctggtagcatacttca |
484 |
Q |
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| T |
25933138 |
ggtgattcaactattattcgttgccataatcttatctaatactaaaaagaaaatgaaactattactgattctggtagcatacttca |
25933053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 25933544 - 25933413
Alignment:
| Q |
8 |
gacatcatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaacc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933544 |
gacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaacc |
25933445 |
T |
|
| Q |
108 |
aagtgatcaaccttttcaggattacctgcttg |
139 |
Q |
| |
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||||||||||||||||||| |||||||||||| |
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| T |
25933444 |
aagtgatcaaccttttcagaattacctgcttg |
25933413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 26101063 - 26100932
Alignment:
| Q |
8 |
gacatcatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaacc |
107 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26101063 |
gacaccatcacaaccctcaacaacagagtcaaaggaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaagc |
26100964 |
T |
|
| Q |
108 |
aagtgatcaaccttttcaggattacctgcttg |
139 |
Q |
| |
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||||| |||||||||| ||||||||||||||| |
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| T |
26100963 |
aagtggtcaacctttttaggattacctgcttg |
26100932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 186 - 338
Target Start/End: Complemental strand, 26100849 - 26100697
Alignment:
| Q |
186 |
gagaaagaatttgaaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagc |
285 |
Q |
| |
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||||||||| |||||||||||| | | || |||||| | ||| |||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
26100849 |
gagaaagaagttgaaggaaaaacatgcacatacttgggtcacggacagtggctcggacagtgtaaccacgttggagtaggaacttgacaatccatgaagc |
26100750 |
T |
|
| Q |
286 |
aataaaaccattagcacctgtcacacacaccacctttccttctccactcatca |
338 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
26100749 |
tataaaaccagaagcacctgtcacacacaccacctttccttccccactcatca |
26100697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 199 - 339
Target Start/End: Complemental strand, 29548865 - 29548725
Alignment:
| Q |
199 |
aaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccatta |
298 |
Q |
| |
|
||||| ||||||| ||||||| || | ||||||||||||||| ||||| ||||||||||| || |||||||| |||| |||||||||||| ||||| | |
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| T |
29548865 |
aaggagaaagaagcactgactagggtcacgaacagtggctctaacagtataaccacgttggagaagaaacttgacaacccatgaagcaatgaaacctgaa |
29548766 |
T |
|
| Q |
299 |
gcacctgtcacacacaccacctttccttctccactcatcat |
339 |
Q |
| |
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|||||||| |||||||| ||||| ||||| |||||| |||| |
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| T |
29548765 |
gcacctgttacacacacaaccttaccttcaccactcttcat |
29548725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 29549050 - 29548958
Alignment:
| Q |
29 |
aacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaacctt |
121 |
Q |
| |
|
|||||| ||||| ||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
29549050 |
aacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccatcaagtttaagcaagtgatcaacctt |
29548958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 29555019 - 29554904
Alignment:
| Q |
212 |
tactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacac |
311 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |||| ||||||||||||| |||| |||||| || |||| |
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| T |
29555019 |
tactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacac |
29554920 |
T |
|
| Q |
312 |
acaccacctttccttc |
327 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
29554919 |
aaaccacctttccttc |
29554904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 29555253 - 29555154
Alignment:
| Q |
35 |
gtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaaccttttcaggattacct |
134 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||||| || || |||||||| | |||||||||| |
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| T |
29555253 |
gtcaaatgaaccttcttctaatagatctgccttgaagaggtgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
29555154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 29559194 - 29559120
Alignment:
| Q |
253 |
acgttgaagtagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacacacaccacctttccttc |
327 |
Q |
| |
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|||||| || ||||||||||||| ||||||||||||| |||| | ||||||| |||||||| ||||||||||| |
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| T |
29559194 |
acgttggagaagaaacttaacaagccatgaagcaatataacctgaaccacctgttacacacacaacctttccttc |
29559120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 87900 - 87805
Alignment:
| Q |
26 |
aacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaacctt |
121 |
Q |
| |
|
||||||||| ||||| | ||||||||| | |||| |||||| || |||||||| |||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
87900 |
aacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaagcttaaccaagtggtcaacctt |
87805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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