View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_10 (Length: 353)
Name: NF5081_low_10
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 21242996 - 21242674
Alignment:
| Q |
20 |
cgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcat |
119 |
Q |
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| T |
21242996 |
cgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcat |
21242897 |
T |
|
| Q |
120 |
caacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttc |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242896 |
caacgacgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttc |
21242797 |
T |
|
| Q |
220 |
acatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242796 |
acatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagat |
21242697 |
T |
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| Q |
320 |
ataaagtttgttatgtagagaat |
342 |
Q |
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||||||||||||||||||||||| |
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| T |
21242696 |
ataaagtttgttatgtagagaat |
21242674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 21258762 - 21258450
Alignment:
| Q |
20 |
cgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcat |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
21258762 |
cgtatgttataaccgccaatctaaacacatgaaacatcggtaaaacgcagaggaacacatt---taattcccctgctaaatcatcatccatgtttatcat |
21258666 |
T |
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| Q |
120 |
caacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttc |
219 |
Q |
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||| || | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| | || ||||||||| |
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| T |
21258665 |
caatgaagtcgcgatgaagttcttgtgggtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt-------tgtcagtctgtttc |
21258573 |
T |
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| Q |
220 |
acatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagat |
319 |
Q |
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|| | | ||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||| | |||| |||||||||||||| |||| |
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| T |
21258572 |
acgttgctttctggtatttctgttacttccccagctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttgcattacctatcagat |
21258473 |
T |
|
| Q |
320 |
ataaagtttgttatgtagagaat |
342 |
Q |
| |
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|||||||||||||| ||| |||| |
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| T |
21258472 |
ataaagtttgttatatagcgaat |
21258450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 21254259 - 21253939
Alignment:
| Q |
20 |
cgtatgttataaccgccaatccaaacacatgaa---acatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttat |
116 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |
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| T |
21254259 |
cgtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaat |
21254160 |
T |
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| Q |
117 |
catcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgt |
216 |
Q |
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||| |||| | || |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||| | ||| |
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| T |
21254159 |
cattaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgtatcgctttgt |
21254060 |
T |
|
| Q |
217 |
ttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgc----attacct |
312 |
Q |
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|||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||| |||||||||||| |||||||||| | ||||||| |
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| T |
21254059 |
ttcacatcgttttctggtaattctgttacttctcatgctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaacccgttacattaattacct |
21253960 |
T |
|
| Q |
313 |
attagatataaagtttgttat |
333 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
21253959 |
attagatgtaaagtttgttat |
21253939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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