View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_12 (Length: 329)
Name: NF5081_low_12
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 45342806 - 45342492
Alignment:
| Q |
6 |
ataacaaaaagggaatttacaagctctgtgtattgtctggtgtgaccattgtctgggatataaacggaaaaacaacaaccaaatagtataccatgccatt |
105 |
Q |
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| T |
45342806 |
ataacaaaaaggtaatttacaagctctgtgtattgtctggtgtgaccattgtctgggatataaacggaaaaacaacaaccaaatagtataccatgccatt |
45342707 |
T |
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| Q |
106 |
gtttacctcattaatgcattttcaactttatttcacgttccagtttttt--gtcacattctctgccatttttgttccttcaacttcttctttttacctat |
203 |
Q |
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| T |
45342706 |
gtt-acctcattaatgcattttcaactttatttcacgttccagttttttttgtcacattctctgccatttttgttccttcaacttcttctttttacctat |
45342608 |
T |
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| Q |
204 |
tcgccgctcctattttctctttcttgttcccttcatttcaataatagaactgcatagagaaatcaatatttgatagagatttgtcactaaaacaagtttg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45342607 |
tcgccgctcctattttctctttcttgttcccttcatttcaataatagaactgcatagagaaatcaatatttgatagagatttgtcactaaaacaagtttg |
45342508 |
T |
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| Q |
304 |
acaatcaacgcttcat |
319 |
Q |
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||||||||| |||||| |
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| T |
45342507 |
acaatcaactcttcat |
45342492 |
T |
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