View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_15 (Length: 311)
Name: NF5081_low_15
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 38235578 - 38235862
Alignment:
| Q |
12 |
aggagcagagagggaactcagaaccgga------atcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcg |
105 |
Q |
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| T |
38235578 |
aggatcagagagggaactcagaaccggaatcggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcg |
38235677 |
T |
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| Q |
106 |
gcgggagagagcgacggcgacccaaatccccggcgagggtaccggagattccaccagagaagaaaattgtggcgggttcacggtctgtttgtcggaggga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235678 |
gcgggagagagcgacggcgacccaaatccccggcgagggtaccggagattccaccggagaagaaaattgtggcgggttcacggtctgtttgtcggaggga |
38235777 |
T |
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| Q |
206 |
attttccgataagctccggcgtgactccggcacgggtgtttgccggcgttcaaggtcgccgtcgtgccacaggacggctggcagc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235778 |
attttccgataagctccggcgtgactccggcacgggtgtttgccggcgttcaaggtcgccgtcgtgccacaggacggctggcagc |
38235862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 37609933 - 37610133
Alignment:
| Q |
12 |
aggagcagagagggaactcagaaccggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcggga |
111 |
Q |
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| T |
37609933 |
aggatcagagagggaactcataaccggaatcggaatcaaaggcacaccaatgcatcaaggaatcgttcttacaaagctgacaggaatatagtcggtggga |
37610032 |
T |
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| Q |
112 |
gagagcgacggcgacccaaatccccggcgagggtaccggagattccaccagagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttc |
211 |
Q |
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| T |
37610033 |
gagagcgacgacgacccaaattatcggcgtgggtactggagattccacgggagaagaaagttgtggttggttcagggtcggttcgtcagagggagttttc |
37610132 |
T |
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| Q |
212 |
c |
212 |
Q |
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| T |
37610133 |
c |
37610133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 13597745 - 13597818
Alignment:
| Q |
12 |
aggagcagagagggaactcagaaccggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaa |
85 |
Q |
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|||| ||||||||||||||| |||||||||||||||| ||| ||| || ||||||||||||||||||||||||| |
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| T |
13597745 |
aggatcagagagggaactcataaccggaatcggaatcaaagccacaccaatgcatcaaggaatcgttcttacaa |
13597818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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