View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5081_low_18 (Length: 271)
Name: NF5081_low_18
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 8202904 - 8203165
Alignment:
| Q |
10 |
ataattctacggcaaaaatacatacagacaggaatttacaatcatgttttccatggttcacatgcatcaaaaacagaaaatcttctgatttctggggtta |
109 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8202904 |
ataattctacggcaaaaagacctacagacaggaatttacaatcatgttttccatggttcacatgcatcaaaaacagaaaatattctgatttctggggtta |
8203003 |
T |
|
| Q |
110 |
attgtaggattaataatgtaatcttcagttgagaactaattctcatcaggaaaaagggcaaaatcatggacaaggtttgtaaagnnnnnnnngcagcggg |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8203004 |
attgtaggaataataatgtaatcttcagttgagaactaattctcatcaggaaaaagggcaaaatcatggacaaggtttgtaaagataaaaaagcagcggg |
8203103 |
T |
|
| Q |
210 |
ttctgagtttctgtaaattcaaaaatcaaatcatttaactaatagaaattgaaacttaaatt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203104 |
ttctgagtttctgtaaattcaaaaatcaaatcatttaactaatagaaattgaaacttaaatt |
8203165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 42360037 - 42360192
Alignment:
| Q |
27 |
atacatacagacaggaatttacaatcatgttttccatggttcacatgcatcaaaaacagaaaatcttctgatttctggggttaattgtaggattaataat |
126 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || ||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
42360037 |
atacatacagataggaatttacaatcatgttttccaaggagcacatacatcaaaaatagatattcttcgaatttctggggttaattgtaggattaatcat |
42360136 |
T |
|
| Q |
127 |
gtaatcttcag-ttgagaactaattctcatcaggaaaaagggcaaaatcatggaca |
181 |
Q |
| |
|
||||||||| | || |||||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
42360137 |
gtaatcttcggtttcagaactaattttcatcagaaaaaagggtaaaatcatggaca |
42360192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University