View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_23 (Length: 252)
Name: NF5081_low_23
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_23 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 34725102 - 34724854
Alignment:
| Q |
8 |
agattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacnnnnnnnnnnn----gaggtaaaatttgaatt |
103 |
Q |
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| T |
34725102 |
agattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacatttattttttttttgaggtaaaatttgaatt |
34725003 |
T |
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| Q |
104 |
agagccgtttggattttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttataagtgtttgtacccgtatataatggatttaa |
203 |
Q |
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| T |
34725002 |
agagccgtttggattttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttccaagtgtttgtacccgtatataatggatttaa |
34724903 |
T |
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| Q |
204 |
acatctgtgtaaaatagttttacactaacatccaatgaaaacctattgt |
252 |
Q |
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| T |
34724902 |
atatctgtgtaaaatagttttacactaacatccaatgaaaacctattgt |
34724854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 34729063 - 34729021
Alignment:
| Q |
210 |
gtgtaaaatagttttacactaacatccaatgaaaacctattgt |
252 |
Q |
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| T |
34729063 |
gtgtaaaatagttttacattgagatccaatgaaaacctattgt |
34729021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 34729217 - 34729157
Alignment:
| Q |
15 |
tctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaac |
75 |
Q |
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| T |
34729217 |
tctgatcatactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaac |
34729157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 6453284 - 6453252
Alignment:
| Q |
210 |
gtgtaaaatagttttacactaacatccaatgaa |
242 |
Q |
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| T |
6453284 |
gtgtaaaatagttttacactaacatgcaatgaa |
6453252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 36636342 - 36636378
Alignment:
| Q |
210 |
gtgtaaaatagttttacactaacatccaatgaaaacc |
246 |
Q |
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| T |
36636342 |
gtgtaaaatagttttacactgacatccaatgagaacc |
36636378 |
T |
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