View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_25 (Length: 249)
Name: NF5081_low_25
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 32243155 - 32243377
Alignment:
| Q |
11 |
cagagaccaattttcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagg |
110 |
Q |
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| T |
32243155 |
cagagaccaattttcttcttgggagcaaccagtataacttcttgaagcatgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagg |
32243254 |
T |
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| Q |
111 |
gcaccgacctatgtacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtg |
210 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32243255 |
gcaccgacctatgtacaccacaatcaacggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctattggtgaataacaatgtg |
32243354 |
T |
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| Q |
211 |
tcccttgccctttggggccatgt |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
32243355 |
tcccttgccctttggggccatgt |
32243377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 32248236 - 32248458
Alignment:
| Q |
11 |
cagagaccaattttcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagg |
110 |
Q |
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||||||||||||| |||| ||||||||| || ||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
32248236 |
cagagaccaatttccttcctgggagcaatcagtataacttcttaaagcgtgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagg |
32248335 |
T |
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| Q |
111 |
gcaccgacctatgtacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtg |
210 |
Q |
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||||||||| ||||||||||||| |||| | | ||||| | |||||||| | ||||| | |||||| |||||||||| |||||||||||| |||| |
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| T |
32248336 |
gcaccgacccatgtacacaacaagcaatgaatttagggatgctgcgttaagaggaaagatggttgagcacctggaacctctattggtgaataaccatgta |
32248435 |
T |
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| Q |
211 |
tcccttgccctttggggccatgt |
233 |
Q |
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|||||||||||||||| ||||| |
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| T |
32248436 |
acccttgccctttggggtcatgt |
32248458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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