View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_5 (Length: 457)
Name: NF5081_low_5
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 594688 - 594259
Alignment:
| Q |
11 |
aatgtgcggacataataccctgcatcatagcagaacaacctgaaaactagacttcaagtaagctactagacttgtctcttctatggcattggcaacatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
594688 |
aatgtgcggacataataccctgcatcatagcagaacaacctgaaaactagacttcaagtaagctactagacttgtctcttctatggcagtggcaacatca |
594589 |
T |
|
| Q |
111 |
aacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaacaatcacgacttcaattg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594588 |
aacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaacaatcacgacttcaattg |
594489 |
T |
|
| Q |
211 |
taattatgcaaagcagcctcataaaaatcacttccagcataagcttctaggtttgacacaagataggcatcaactaccttgagaacaatcgatgcttcct |
310 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594488 |
taattatgcaaagcagcctcataaagatcacttccaacataagcttctaggtttgacacaagataggcatcaactaccttgagaacaatcgatgcttcct |
594389 |
T |
|
| Q |
311 |
ccctgggatccttcaaatcaccctctttgatatcaacacctttctttggatgatcatgtatgaaaccattataataatgtgcaggtactagacaatcgcc |
410 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
594388 |
ccctgggatccttcaaatcaccctctttgatatcaacacctttctttggatgatcatgtatgaaaccattataataatgtgcaagtactagacaatcgcc |
594289 |
T |
|
| Q |
411 |
ttgcgtagagaaggttggtttggtgacaat |
440 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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|
| T |
594288 |
ttgcatagagaaggttggtttggtgacaat |
594259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 37550835 - 37550722
Alignment:
| Q |
94 |
tggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaac |
193 |
Q |
| |
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||||| ||||| |||||||||| ||||||||||||| | |||||||||| |||| | ||||||| | ||||||| ||||| |||||| || |||||||| |
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| T |
37550835 |
tggcagtggcatcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaac |
37550736 |
T |
|
| Q |
194 |
aatcacgacttcaa |
207 |
Q |
| |
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|||||||||||||| |
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| T |
37550735 |
aatcacgacttcaa |
37550722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 37653664 - 37653551
Alignment:
| Q |
94 |
tggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacgaaataatacaac |
193 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| | |||||||||| |||| | ||||||| | ||||||| ||||| |||||| || |||||||| |
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| T |
37653664 |
tggcagtggcatcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaac |
37653565 |
T |
|
| Q |
194 |
aatcacgacttcaa |
207 |
Q |
| |
|
|||||||||||||| |
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|
| T |
37653564 |
aatcacgacttcaa |
37653551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 39925946 - 39925810
Alignment:
| Q |
71 |
agctactagacttgtctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaa |
170 |
Q |
| |
|
||||||||||||| ||||| ||||| | ||||| |||||||||||||| ||||||||| | |||||||||| | | | ||||| | | |||||||| |
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|
| T |
39925946 |
agctactagacttccctcttttatggaagtggcatcatcaaacttggtgttttttctcaatgacataaacttcttaggtgtctgcaacatggatttcaaa |
39925847 |
T |
|
| Q |
171 |
atcgatcaacgaaataatacaacaatcacgacttcaa |
207 |
Q |
| |
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||| ||||||||| ||||||||||||| |||||||| |
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|
| T |
39925846 |
atcaatcaacgaacaaatacaacaatcatgacttcaa |
39925810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 39915631 - 39915707
Alignment:
| Q |
106 |
catcaaacttggtgctttttctcattaacataaacttatcacattcctgcagtacgaatttcaaaatcgatcaacga |
182 |
Q |
| |
|
|||||||||| ||||||||||||| | | |||||||| |||| | |||||| | ||||||||||||| |||||||| |
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|
| T |
39915631 |
catcaaacttagtgctttttctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacga |
39915707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 45085115 - 45085054
Alignment:
| Q |
86 |
ctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcac |
147 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||| | |||||||||| |||| |
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|
| T |
45085115 |
ctcttctatgacagcggcaacatcaaacttggtgctttttctcaatgacataaacttctcac |
45085054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 436
Target Start/End: Original strand, 12091886 - 12091914
Alignment:
| Q |
408 |
gccttgcgtagagaaggttggtttggtga |
436 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
12091886 |
gccttgcgtagagaaggttggtttggtga |
12091914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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