View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5081_low_6 (Length: 451)
Name: NF5081_low_6
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5081_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 4273531 - 4273968
Alignment:
| Q |
1 |
taagcacttaattaagttgtttatccaacttagggcctaaaactacagttggcagtgattatgaaatattattatacacttacaataggcttgccagtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4273531 |
taagcacttaattaagttgtttatccaacttagggcctaaaactacagttggcagtgattatgaaatattattatacacttacaataggcttgccagtca |
4273630 |
T |
|
| Q |
101 |
caactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtctgtgaattagttcccatatcaggggcaggaacatccctatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4273631 |
caactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtctgtgaattagttcccatatcaggggcaggaacatccctatg |
4273730 |
T |
|
| Q |
201 |
aatgccaatgaggtcatgaatcttttgggtgaaaacacgagtgagacgttctagctcactgatgctcagatcctttgggttgcagccaattccgcccttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4273731 |
aatgccaatgaggtcatgaatcttttgggtgaaaacacgagtgagacgttctagctcactgatgctcagatcctttgggttgcagccaattccgcccttt |
4273830 |
T |
|
| Q |
301 |
gctcctccgtatggaatgtctaccacagctgtcttccatgtcattagctgagctagagcattcacttcatcagggtcaacctagcaccagaaaatgtgac |
400 |
Q |
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| T |
4273831 |
gctcctccgtatggaatgtctaccacagctgtcttccatgtcattagctgagcaagagcattaacttcatcagggtcaacctagcaccagaaaatgtgac |
4273930 |
T |
|
| Q |
401 |
actttaatatgtagatactcaaaagcaaggtaaatagt |
438 |
Q |
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| T |
4273931 |
actttaatatgtagatactcaaaagcaaggtaaatagt |
4273968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 401
Target Start/End: Complemental strand, 41211273 - 41211041
Alignment:
| Q |
169 |
gttcccatatcaggggcaggaacatccctatgaatgccaatgaggtcatgaatcttttgggtgaaaacacgagtgagacgttctagctcactgatgctca |
268 |
Q |
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|||||||||||||| || |||||||| | |||| ||| || | ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
41211273 |
gttcccatatcaggagctggaacatctcgctgaacgccgattaaatcatgaatcttttgggtgaaaacccgagttagacgttctaactcactgatgctca |
41211174 |
T |
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| Q |
269 |
gatcctttgggttgcagccaattccgccctttgctcctccgtatggaatgtctaccacagctgtcttccatgtcattagctgagctagagcattcacttc |
368 |
Q |
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| T |
41211173 |
gatccctcgggttgcaaccaattccaccctttgcacctccataaggaatgtctgctacagctgtcttccatgtcataagctgagctagagcattcacctc |
41211074 |
T |
|
| Q |
369 |
atcagggtcaacctagcaccagaaaatgtgaca |
401 |
Q |
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| T |
41211073 |
atcagggtcaacctggcaccagagaatttgaca |
41211041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 41211455 - 41211373
Alignment:
| Q |
78 |
acttacaataggcttgccagtcacaactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtct |
160 |
Q |
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| T |
41211455 |
acttacaataggctttccggtcacaacagcaggcgaatgtccatgaaatttagaatactcatctagaatccatgccatggtct |
41211373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 10151328 - 10151245
Alignment:
| Q |
78 |
acttacaataggcttgccagtcacaactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtctg |
161 |
Q |
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| T |
10151328 |
acttactataggttttccagtcactactgcaggagaatgaccatgaaattttgaatactcatctagtatccatgccattgtctg |
10151245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 33196904 - 33196846
Alignment:
| Q |
325 |
acagctgtcttccatgtcattagctgagctagagcattcacttcatcagggtcaaccta |
383 |
Q |
| |
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|||||||| |||||||||||||| || |||| ||||||||||||||| || |||||||| |
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| T |
33196904 |
acagctgttttccatgtcattagttgcgctaaagcattcacttcatctggatcaaccta |
33196846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3179681 - 3179652
Alignment:
| Q |
1 |
taagcacttaattaagttgtttatccaact |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3179681 |
taagcacttaattaagttgtttatccaact |
3179652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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