View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5081_low_8 (Length: 413)

Name: NF5081_low_8
Description: NF5081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5081_low_8
NF5081_low_8
[»] chr5 (25 HSPs)
chr5 (23-409)||(30435002-30435391)
chr5 (23-396)||(30242919-30243295)
chr5 (23-401)||(29871366-29871747)
chr5 (24-401)||(30482585-30482965)
chr5 (23-401)||(30339067-30339448)
chr5 (23-409)||(30748823-30749212)
chr5 (23-409)||(30677702-30678091)
chr5 (23-409)||(29852479-29852880)
chr5 (23-294)||(30399245-30399516)
chr5 (23-293)||(30714087-30714357)
chr5 (23-293)||(30059537-30059807)
chr5 (23-188)||(4380838-4381003)
chr5 (313-409)||(30713956-30714052)
chr5 (56-293)||(17418822-17419059)
chr5 (313-401)||(30059842-30059930)
chr5 (311-386)||(30399548-30399623)
chr5 (323-408)||(30206008-30206093)
chr5 (317-409)||(17418691-17418783)
chr5 (112-286)||(30205782-30205956)
chr5 (204-289)||(30474733-30474818)
chr5 (252-287)||(4381005-4381040)
chr5 (215-278)||(30522299-30522362)
chr5 (215-278)||(30562639-30562702)
chr5 (313-383)||(17982400-17982470)
chr5 (313-390)||(30474854-30474931)
[»] chr4 (2 HSPs)
chr4 (23-409)||(20297125-20297526)
chr4 (313-357)||(52351439-52351483)
[»] chr7 (2 HSPs)
chr7 (23-294)||(26706512-26706783)
chr7 (311-389)||(26706815-26706893)
[»] chr1 (3 HSPs)
chr1 (313-403)||(7098897-7098987)
chr1 (313-390)||(7582272-7582349)
chr1 (238-299)||(7582378-7582439)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 30435002 - 30435391
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |  || | | |||| |||||||||||||||||    
T  30435002 gggaaagccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataccatatactctaagtttttttagagatggtagtt 30435101  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  30435102 taccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccgtc 30435201  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat----cactctcccatga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |    |  | | ||| ||    
T  30435202 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtaattgctcagatctaattatagattcctgttgcgatat-ccacga 30435300  T
Q  319 caagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctactc 409  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  30435301 caagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgatactc 30435391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 396
Target Start/End: Complemental strand, 30243295 - 30242919
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||| ||||| ||||||| |||||||||    
T  30243295 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatttcgaataattccagtttttttagatatggtagtt 30243196  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||||||||||||| || |||||||| ||    
T  30243195 taccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctc 30243096  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat----cactctcccatga 318  Q
    |||| || |||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||       | | ||||||    
T  30243095 atagaaacttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatagattcatgttgggatat-ccatga 30242997  T
Q  319 caagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaa 396  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  30242996 caagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaa 30242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 401
Target Start/End: Original strand, 29871366 - 29871747
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |  ||||| ||||| |||||||||||||||||    
T  29871366 gggaaaatcctcacctccataccatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtt 29871465  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| ||||||||||||||||||||| |||||||||| |  |||||||||||||||||||||||||||||   ||||||||||||| ||||||||||| ||    
T  29871466 taccaagtaacggaagccgcacaatcttgttgcaatcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttc 29871565  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat----cactctcccatga 318  Q
    |||| |||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |  | | ||||||    
T  29871566 atagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcctgttgcgatat-ccatga 29871664  T
Q  319 caagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctt 401  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  29871665 caagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctt 29871747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 401
Target Start/End: Original strand, 30482585 - 30482965
Alignment:
Q  24 ggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagttt 123  Q
    |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  |  ||||| ||||| ||||||||||||||||||    
T  30482585 ggaaaaccatcacctccacaccatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagttt 30482684  T
Q  124 actaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtca 223  Q
    || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  30482685 accaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttca 30482784  T
Q  224 tagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat----cactctcccatgac 319  Q
    | | |||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |       | | |||||||    
T  30482785 ttgtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcaagtacttgctcagcactaattatagattcctgttgggatat-ccatgac 30482883  T
Q  320 aagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  30482884 aagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatcctt 30482965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 401
Target Start/End: Complemental strand, 30339448 - 30339067
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  || | | || | |||||||||||||||||    
T  30339448 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcatacgatatactctaagattttttagagatggtagtt 30339349  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30339348 taccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaaggcttatccaacttggtaacgataatccttc 30339249  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat----cactctcccatga 318  Q
    |||| ||||||    |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    |  | | ||| ||    
T  30339248 atagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaattatagattcctgttgcgatat-ccacga 30339150  T
Q  319 caagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctt 401  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  30339149 caagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatcctt 30339067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 30748823 - 30749212
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |  |||| | |||| |||||||||||||||||    
T  30748823 gggaaaacgctcacctccataccatactcagattcatcatcatccaagtatttcagattattcataccatataatcttagtttttttagagatggtagtt 30748922  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| ||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||| ||    
T  30748923 taccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttc 30749022  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcatcactct---cccatgac 319  Q
    |||| |||||||   |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||   ||||||| ||  | |   ||||||||    
T  30749023 atagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatacccatgac 30749122  T
Q  320 aagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctactc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  30749123 aagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactc 30749212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 409
Target Start/End: Complemental strand, 30678091 - 30677702
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||  |||| |||||  |||||||||||||||||    
T  30678091 gggaaaaccctcaccttcataccatcctcagattcatcatcatccaagtatttcagattattcatacgagataatctcagtctttttagagatggtagtt 30677992  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| | |||||||||||||||||||||||||||| | |  ||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||  ||    
T  30677991 taccacgtaacggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttc 30677892  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcatcactct---cccatgac 319  Q
    |||| |||||||   |||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||   ||||||| ||  | |   ||||||||    
T  30677891 atagtaatttattgtcaagcatttgagatttgagtgaggtttaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatccccatgac 30677792  T
Q  320 aagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctactc 409  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||    
T  30677791 aagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttgatactc 30677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 29852479 - 29852880
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    | ||||  ||  | ||||||| |||||||||    
T  29852479 gggaaaaccctcacctccataccatcctcagattcatcatcatctaagtatttcagattatccattttgaataataccaacttttttagatatggtagtt 29852578  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||    
T  29852579 tacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttggtaacgataatccttc 29852678  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat------------tatagattcatca--- 307  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||              || || |||||       
T  29852679 atagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcatcatgaatagttgggggctcagtaaatccatcattg 29852778  T
Q  308 ctctcccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctac 407  Q
    || ||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| || ||||  ||||| |||||| |||    
T  29852779 ctttcccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgatac 29852878  T
Q  408 tc 409  Q
    ||    
T  29852879 tc 29852880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 30399245 - 30399516
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  |  ||||| ||||| ||||||||| |||||||    
T  30399245 gggaaaaccctcacctccacaccatcctgagattcatcatcatccaagtatttcagattatccatatcagataattccagtttttttagagacggtagtt 30399344  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| || |||| |||| ||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||   ||||||||||||| || |||||||||||    
T  30399345 taccaattaactgaagtcgcacaactttcttgcaattcccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtc 30399444  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat 294  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  30399445 atagtaatttattttcaagcacttgagatttgagtgaggttgaagcacttcgagtacttgctgagcactaat 30399516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 30714357 - 30714087
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |  |||| |||||| |||||||||||||||||    
T  30714357 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattgataccatataatctcagtttttttagagatggtagtt 30714258  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| |||||||||||||||||||||||| |||||||    ||||  |||||||| ||||||||||||||   ||||||||||||| || |||||||| ||    
T  30714257 taccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaataattatccaacttggtaatgataatccttc 30714158  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 293  Q
    |||| |||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30714157 atagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 30714087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 30059537 - 30059807
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||| ||| | ||||| ||||||||||     
T  30059537 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataattccaggttttttaaagatggtagta 30059636  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| ||||||| |||||||||||| ||| || |||  |  |||||||||||||| ||||||||||||||   |||||||||||||||| |||||||| ||    
T  30059637 taccaagtaactgaagccgcacaactttcttacaacgcttaagtttaagagaaactaaattactaagaataattatccaacttggcaaggataatccctc 30059736  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 293  Q
    |||| || |||| | |||||| |||||||||||||||||||||||  |||| |||||||||||| ||||||    
T  30059737 atagaaacttattttcaagcagttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 30059807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 4380838 - 4381003
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||| || || ||||||||||| |||||    
T  4380838 gggaaaaccctcacctccataccatcctcaaattcatcatcatccaagtatttcagattatccgtacgaaataattccaatttttttagagatgttagtt 4380937  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaa 188  Q
    ||| |||| ||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||    
T  4380938 taccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 409
Target Start/End: Complemental strand, 30714052 - 30713956
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctactc 409  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  30714052 ccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactc 30713956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 293
Target Start/End: Complemental strand, 17419059 - 17418822
Alignment:
Q  56 tcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtttactaagtaacggaagccgcacaattttgttgc 155  Q
    |||||||||||||||||||||||||| | |||   |  ||||| ||||  |||||||||| ||||||||| || | ||| ||||||||||   || |  |    
T  17419059 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 17418960  T
Q  156 aattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtcatagcaatttatatccaagcacttgagatttga 255  Q
    |||| | ||||  || |  || ||||||||||||||  |||||||||||||| ||| ||| ||| |||||| || |||| | ||||||||||||||||||    
T  17418959 aattactaagtgcaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 17418860  T
Q  256 gtgaggttgaagctcttcgagtacttgctcagcactaa 293  Q
    ||||||||||||| |||| |||| ||||||||||||||    
T  17418859 gtgaggttgaagcacttcaagtagttgctcagcactaa 17418822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 30059842 - 30059930
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctt 401  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||||    
T  30059842 ccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatcctt 30059930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 30399548 - 30399623
Alignment:
Q  311 tcccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaa 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| ||||    
T  30399548 tcccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaa 30399623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 30206008 - 30206093
Alignment:
Q  323 cataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctact 408  Q
    |||||||| || ||||||||||||||||||||||| || | || ||||||||||||||||| |||||  ||||| |||||| ||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatact 30206093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 17418783 - 17418691
Alignment:
Q  317 gacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctactc 409  Q
    |||||||||||||| || |||||||||||||| ||||| |||||   || ||||||||||||| |||||||||  ||||| |||||| |||||    
T  17418783 gacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactc 17418691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 286
Target Start/End: Original strand, 30205782 - 30205956
Alignment:
Q  112 agatggtagtttactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaac 211  Q
    |||| ||||||||| || | ||||||||||||||  ||| |  ||||||||||||  ||||| || ||||||||| ||||  |||||||||||||| ||     
T  30205782 agattgtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaag 30205881  T
Q  212 gataatccgtcatag---caatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctca 286  Q
     |||||| || ||||   ||| ||||   ||| | ||||||||||||||||||||||||| |||| | || |||||||    
T  30205882 aataatctgttatagtgacaaattat---caacctcttgagatttgagtgaggttgaagcacttcaaatagttgctca 30205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 30474733 - 30474818
Alignment:
Q  204 ttggcaacgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagca 289  Q
    |||||||  |||||||||||||| ||  ||| | ||| | |||||||||||||||||||||||||  ||| |||||||||||||||    
T  30474733 ttggcaagcataatccgtcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 4381005 - 4381040
Alignment:
Q  252 ttgagtgaggttgaagctcttcgagtacttgctcag 287  Q
    |||||||||||||||||||||||| |||||||||||    
T  4381005 ttgagtgaggttgaagctcttcgaatacttgctcag 4381040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 30522362 - 30522299
Alignment:
Q  215 aatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagta 278  Q
    ||||||||||||| || ||| | ||||  ||||||||||||||||||||||||| |||| ||||    
T  30522362 aatccgtcatagccatgtattttcaagatcttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 30562702 - 30562639
Alignment:
Q  215 aatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagta 278  Q
    ||||||||||||| || ||| | ||||  ||||||||||||||||||||||||| |||| ||||    
T  30562702 aatccgtcatagccatgtattttcaagatcttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 17982400 - 17982470
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactac 383  Q
    |||||||| |||||||||||  |||||||||||||| || ||||| ||   |||| |||||||||||||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac 17982470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 30474854 - 30474931
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacatt 390  Q
    |||||||||| ||||||| || ||||| ||||||||||||||||| ||   |  ||||||| |||| |||||||||||    
T  30474854 ccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatt 30474931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 23 - 409
Target Start/End: Complemental strand, 20297526 - 20297125
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||  |  || | |||||| |||||||||||||||||    
T  20297526 gggaaaaccctcacctccctaccatcccgagattcatcatcatccaagtatttcagattatacataccagatattgtcagtttttttagagatggtagtt 20297427  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| || |||||||||| ||||||||| ||||||||||  ||||| || ||||| ||||||||||||||   ||||||||||||| ||| | ||||| ||    
T  20297426 taccaattaacggaagctgcacaatttcgttgcaattctcaagttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatc 20297327  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa------------ttatagattcatca--- 307  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |            |  || ||| ||||       
T  20297326 atagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcgagtactttctcagcacttacagttggtggcttggtaaatttatcattg 20297227  T
Q  308 ctctcccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttgctac 407  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||| ||   || ||||||||||| ||| |||||||  ||||| |||||| |||    
T  20297226 ctttcccaagacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatac 20297127  T
Q  408 tc 409  Q
    ||    
T  20297126 tc 20297125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 52351439 - 52351483
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 357  Q
    |||||||| |||||||||  | |||||||||||||||||||||||    
T  52351439 ccatgacaggcataattctcggaggtcttttttacccatcaaatt 52351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 26706512 - 26706783
Alignment:
Q  23 gggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccataagaattaatttcagttgttttagagatggtagtt 122  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||  |  ||||| ||||| || ||||||||||||||    
T  26706512 gggaaaaccctcacctccatgccatcctgagattcatcatcatccaagtatttcagattaaccatagaagataattccagtttttctagagatggtagtt 26706611  T
Q  123 tactaagtaacggaagccgcacaattttgttgcaattccaaagtttaagagaaattaaattactaagaaggcttatccaacttggcaacgataatccgtc 222  Q
    ||| |||||||||||||||||||| ||| ||||||| || ||||| |||||||| ||||||||||||||  |||| ||||||||| || |||||||||||    
T  26706612 taccaagtaacggaagccgcacaaatttcttgcaatccccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtc 26706711  T
Q  223 atagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat 294  Q
     ||| | ||||| ||||||||||||||||||||||||||||||||| ||| |||||  |||||| |||||||    
T  26706712 gtagtactttatttccaagcacttgagatttgagtgaggttgaagcactttgagtagctgctcaacactaat 26706783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 26706815 - 26706893
Alignment:
Q  311 tcccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacat 389  Q
    |||||||||||||||||||  |  |||| |||||| ||||||||||| ||   || ||||||||||||||| |||||||    
T  26706815 tcccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacat 26706893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 7098897 - 7098987
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacattgtttaatcctttg 403  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||   || |||||||||||||||||||||||| | ||| ||||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 7098987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 7582349 - 7582272
Alignment:
Q  313 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgtttcagcttcagataaactaccaacatt 390  Q
    ||||||||||||||||||||  |||||||||||||||||||| || ||   || |||||||||||||||||| |||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatt 7582272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 7582439 - 7582378
Alignment:
Q  238 caagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatag 299  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||||| ||  ||||||| ||||    
T  7582439 caagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatag 7582378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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