View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082-Insertion-1 (Length: 1200)

Name: NF5082-Insertion-1
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082-Insertion-1
NF5082-Insertion-1
[»] chr4 (41 HSPs)
chr4 (363-933)||(52398458-52399028)
chr4 (7-312)||(8347945-8348247)
chr4 (204-316)||(8348679-8348791)
chr4 (590-701)||(29691536-29691647)
chr4 (590-699)||(35166834-35166943)
chr4 (601-701)||(3296554-3296654)
chr4 (590-701)||(51906787-51906898)
chr4 (601-701)||(3296923-3297023)
chr4 (601-701)||(30608612-30608712)
chr4 (601-701)||(48553907-48554007)
chr4 (615-700)||(25917031-25917116)
chr4 (598-691)||(30608266-30608359)
chr4 (609-702)||(38759714-38759807)
chr4 (601-701)||(7118143-7118243)
chr4 (601-701)||(51906431-51906531)
chr4 (250-312)||(50464543-50464605)
chr4 (590-702)||(26168003-26168114)
chr4 (601-701)||(41510079-41510179)
chr4 (600-691)||(34129015-34129106)
chr4 (601-693)||(34129279-34129371)
chr4 (258-310)||(56303733-56303785)
chr4 (590-657)||(1791516-1791583)
chr4 (601-701)||(26168371-26168473)
chr4 (598-657)||(30047992-30048051)
chr4 (598-657)||(30062333-30062392)
chr4 (601-696)||(30952980-30953075)
chr4 (254-312)||(39819403-39819461)
chr4 (258-307)||(30937972-30938021)
chr4 (602-643)||(34397717-34397758)
chr4 (604-701)||(48760097-48760194)
chr4 (936-1009)||(52398322-52398399)
chr4 (665-701)||(1791332-1791368)
chr4 (633-701)||(29691750-29691818)
chr4 (629-701)||(34294463-34294533)
chr4 (601-701)||(56106440-56106540)
chr4 (313-348)||(49489237-49489272)
chr4 (662-708)||(10580134-10580179)
chr4 (604-701)||(35469045-35469142)
chr4 (253-319)||(56304379-56304444)
chr4 (633-698)||(17288384-17288449)
chr4 (633-698)||(54142339-54142404)
[»] chr6 (21 HSPs)
chr6 (174-306)||(2296414-2296546)
chr6 (590-699)||(21113042-21113151)
chr6 (601-701)||(5974022-5974122)
chr6 (604-701)||(1869462-1869559)
chr6 (603-701)||(4510199-4510298)
chr6 (601-701)||(8710320-8710419)
chr6 (590-701)||(7645950-7646061)
chr6 (623-701)||(211452-211530)
chr6 (602-700)||(14712670-14712767)
chr6 (647-701)||(17157858-17157912)
chr6 (590-701)||(211689-211800)
chr6 (250-306)||(22721926-22721982)
chr6 (590-701)||(14712974-14713085)
chr6 (590-701)||(17157557-17157668)
chr6 (601-701)||(25932094-25932190)
chr6 (264-306)||(9956057-9956099)
chr6 (252-310)||(30322383-30322441)
chr6 (633-701)||(14712841-14712909)
chr6 (264-307)||(18100536-18100579)
chr6 (263-312)||(15294654-15294703)
chr6 (633-698)||(19579213-19579278)
[»] chr1 (32 HSPs)
chr1 (190-312)||(47895423-47895545)
chr1 (601-701)||(9880495-9880595)
chr1 (590-702)||(50359135-50359246)
chr1 (591-701)||(5683172-5683282)
chr1 (594-701)||(18179890-18179997)
chr1 (590-700)||(31436351-31436461)
chr1 (604-701)||(47541529-47541626)
chr1 (601-701)||(18180257-18180357)
chr1 (590-701)||(5683529-5683640)
chr1 (600-675)||(19895778-19895853)
chr1 (601-701)||(5172756-5172856)
chr1 (590-701)||(6751321-6751433)
chr1 (250-319)||(37403278-37403347)
chr1 (598-694)||(50359415-50359511)
chr1 (590-701)||(19895411-19895522)
chr1 (601-699)||(6751060-6751158)
chr1 (601-701)||(3591316-3591416)
chr1 (604-701)||(4288422-4288514)
chr1 (251-307)||(29406805-29406861)
chr1 (633-701)||(36793585-36793653)
chr1 (601-701)||(48155258-48155358)
chr1 (662-701)||(18180146-18180185)
chr1 (266-312)||(21783286-21783332)
chr1 (590-701)||(9880758-9880869)
chr1 (264-312)||(34083179-34083227)
chr1 (665-708)||(9880662-9880705)
chr1 (598-657)||(48155028-48155087)
chr1 (633-687)||(19895598-19895652)
chr1 (242-312)||(27789364-27789434)
chr1 (255-317)||(38194249-38194311)
chr1 (596-701)||(45664698-45664803)
chr1 (260-305)||(45528395-45528439)
[»] chr7 (31 HSPs)
chr7 (590-701)||(22948846-22948957)
chr7 (600-701)||(32092239-32092340)
chr7 (600-700)||(11974676-11974776)
chr7 (601-701)||(17075596-17075696)
chr7 (601-701)||(44803611-44803711)
chr7 (590-701)||(20543922-20544033)
chr7 (601-701)||(5029733-5029832)
chr7 (601-701)||(17075230-17075330)
chr7 (601-701)||(23548986-23549086)
chr7 (601-701)||(42750097-42750197)
chr7 (602-701)||(10466759-10466858)
chr7 (594-657)||(32092501-32092564)
chr7 (600-701)||(49053858-49053960)
chr7 (601-701)||(20544290-20544389)
chr7 (598-701)||(28852704-28852807)
chr7 (598-676)||(11975039-11975117)
chr7 (603-701)||(18152767-18152865)
chr7 (254-319)||(1469032-1469097)
chr7 (601-701)||(28838366-28838463)
chr7 (604-701)||(28854688-28854785)
chr7 (623-687)||(16755634-16755698)
chr7 (634-701)||(30938606-30938673)
chr7 (264-307)||(32303858-32303901)
chr7 (662-708)||(44803498-44803544)
chr7 (634-694)||(27311060-27311120)
chr7 (259-307)||(31238929-31238977)
chr7 (260-306)||(15894683-15894729)
chr7 (260-306)||(15899346-15899392)
chr7 (647-701)||(23548065-23548119)
chr7 (601-643)||(49053550-49053592)
chr7 (621-710)||(6621115-6621202)
[»] chr2 (26 HSPs)
chr2 (600-701)||(2517424-2517525)
chr2 (601-701)||(2191228-2191328)
chr2 (601-701)||(3691368-3691468)
chr2 (598-701)||(21182318-21182421)
chr2 (601-701)||(21216934-21217034)
chr2 (601-701)||(21217300-21217400)
chr2 (601-701)||(21265002-21265102)
chr2 (601-701)||(21265368-21265468)
chr2 (600-701)||(39729584-39729685)
chr2 (601-701)||(21267347-21267447)
chr2 (601-701)||(24093167-24093267)
chr2 (601-701)||(3691094-3691194)
chr2 (590-697)||(10706619-10706724)
chr2 (590-701)||(32114177-32114287)
chr2 (621-701)||(7083533-7083613)
chr2 (242-310)||(30517121-30517189)
chr2 (260-312)||(37911532-37911584)
chr2 (251-309)||(6204289-6204347)
chr2 (265-307)||(36780883-36780925)
chr2 (601-657)||(2606635-2606691)
chr2 (601-701)||(32114450-32114550)
chr2 (665-708)||(3691261-3691304)
chr2 (634-701)||(10710842-10710909)
chr2 (264-306)||(20463500-20463542)
chr2 (603-701)||(32860825-32860923)
chr2 (636-701)||(2191401-2191466)
[»] chr3 (32 HSPs)
chr3 (598-698)||(51471349-51471449)
chr3 (590-701)||(13637487-13637597)
chr3 (601-697)||(13637759-13637855)
chr3 (601-701)||(22814307-22814407)
chr3 (601-701)||(43933451-43933551)
chr3 (604-710)||(25770324-25770429)
chr3 (601-702)||(37172091-37172192)
chr3 (604-701)||(44504368-44504465)
chr3 (598-701)||(9218490-9218592)
chr3 (598-697)||(34743446-34743545)
chr3 (602-701)||(43933708-43933806)
chr3 (601-699)||(44504105-44504203)
chr3 (601-700)||(9217832-9217931)
chr3 (590-708)||(50732230-50732347)
chr3 (590-708)||(50780508-50780625)
chr3 (264-312)||(35652225-35652273)
chr3 (251-311)||(40935908-40935968)
chr3 (601-701)||(26741283-26741379)
chr3 (265-307)||(7565330-7565372)
chr3 (600-701)||(25770694-25770795)
chr3 (611-676)||(51755903-51755968)
chr3 (633-701)||(25770505-25770573)
chr3 (600-701)||(27013424-27013521)
chr3 (601-701)||(37172455-37172555)
chr3 (633-699)||(132070-132136)
chr3 (265-307)||(22980020-22980062)
chr3 (313-347)||(32834370-32834404)
chr3 (647-701)||(45728342-45728396)
chr3 (20-53)||(24162677-24162710)
chr3 (20-53)||(24163347-24163380)
chr3 (633-698)||(48868598-48868663)
chr3 (20-53)||(55201599-55201632)
[»] scaffold0009 (2 HSPs)
scaffold0009 (590-701)||(108090-108201)
scaffold0009 (601-701)||(107733-107833)
[»] chr8 (31 HSPs)
chr8 (590-701)||(6298003-6298114)
chr8 (601-701)||(6297841-6297941)
chr8 (590-701)||(9800050-9800161)
chr8 (590-701)||(26997837-26997948)
chr8 (604-701)||(7344838-7344935)
chr8 (601-701)||(17914208-17914308)
chr8 (601-699)||(6297475-6297573)
chr8 (603-701)||(13315213-13315311)
chr8 (590-700)||(16662180-16662290)
chr8 (605-701)||(26243378-26243474)
chr8 (602-701)||(9800323-9800422)
chr8 (590-675)||(12489265-12489350)
chr8 (601-701)||(10047490-10047589)
chr8 (242-312)||(42757396-42757466)
chr8 (600-701)||(10047856-10047957)
chr8 (242-319)||(12296133-12296210)
chr8 (590-655)||(21005779-21005844)
chr8 (590-701)||(17915475-17915585)
chr8 (624-701)||(16662473-16662550)
chr8 (605-694)||(21006105-21006194)
chr8 (633-701)||(4624544-4624612)
chr8 (633-701)||(12489538-12489605)
chr8 (633-701)||(26720332-26720400)
chr8 (260-307)||(29702535-29702582)
chr8 (260-307)||(35020886-35020933)
chr8 (260-310)||(8744249-8744299)
chr8 (242-312)||(12300205-12300275)
chr8 (253-319)||(21348345-21348411)
chr8 (262-299)||(35751651-35751688)
chr8 (250-311)||(37810321-37810382)
chr8 (601-701)||(44024236-44024336)
[»] chr5 (25 HSPs)
chr5 (600-701)||(87239-87340)
chr5 (601-701)||(8750339-8750439)
chr5 (590-701)||(3935662-3935773)
chr5 (601-701)||(16284285-16284385)
chr5 (601-701)||(31176518-31176618)
chr5 (590-701)||(31588314-31588426)
chr5 (596-701)||(8750021-8750126)
chr5 (604-701)||(18999622-18999719)
chr5 (600-700)||(8648043-8648143)
chr5 (601-695)||(18339090-18339184)
chr5 (590-701)||(13987293-13987405)
chr5 (590-701)||(35373465-35373570)
chr5 (625-700)||(18340653-18340728)
chr5 (590-700)||(30415452-30415561)
chr5 (242-307)||(34607087-34607152)
chr5 (633-701)||(119795-119863)
chr5 (601-701)||(18999377-18999477)
chr5 (251-319)||(31930558-31930626)
chr5 (601-657)||(35383295-35383351)
chr5 (619-701)||(20892542-20892623)
chr5 (624-701)||(87030-87107)
chr5 (259-312)||(31659046-31659099)
chr5 (606-701)||(1650016-1650110)
chr5 (633-687)||(19352496-19352550)
chr5 (260-305)||(33111274-33111319)
[»] scaffold0063 (2 HSPs)
scaffold0063 (602-701)||(35172-35271)
scaffold0063 (598-701)||(34803-34906)
[»] scaffold0933 (1 HSPs)
scaffold0933 (600-657)||(546-603)
[»] scaffold0517 (1 HSPs)
scaffold0517 (250-319)||(4729-4798)
[»] scaffold0059 (1 HSPs)
scaffold0059 (253-312)||(8927-8986)
[»] scaffold0013 (1 HSPs)
scaffold0013 (253-312)||(236412-236471)


Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 363 - 933
Target Start/End: Complemental strand, 52399028 - 52398458
Alignment:
Q  363 acccaaagaagaagactcagttacgacacgaacaatgtggaattttatccaaccctgtacaccctcatgtcccattcatcttgccataggaataagctgg 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52399028 acccaaagaagaagactcagttacgacacgaacaatgtggaattttatccaaccctgtacaccctcatgtcccattcatcttgccataggaataagctgg 52398929  T
Q  463 ttagaagacgaacttgaattagggagaagatatatgttgcggttttgctctttttaaaccatatcctactagtatgttttgttctctttttgcactagta 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52398928 ttagaagacgaacttgaattagggagaagatatatgttgcggttttgctctttttaaaccatatcctactagtatgttttgttctctttttgcactagta 52398829  T
Q  563 actttgaagcataattatttttgtcttttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagag 662  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||||||| | ||||| ||||||||||    
T  52398828 attttgaagcataattatttttgtc-tttaacagtagagactaattttgataacgaaaataaaatataagaattttaaaaatatttaataaaatgcagag 52398730  T
Q  663 attattcttcaaagtgacgcaaaatgtaaggactaaaaaacatattgaccatatccctatctttttaatatctatcatatcatcaatttattacaacatt 762  Q
    | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52398729 actattcttcaaagtggcgcaaaatgtaaggaataaaaaacatattgaccatatccctatctttttaatatctatcatatcatcaatttattacaacatt 52398630  T
Q  763 c-nnnnnnncctctcaactcaaggtgtttaaagtgtttatggctttctaaaaatcatttttcaataaatattttaaatttataagttgatttaggatgat 861  Q
    |        |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52398629 cttttttatcctcacaactcaaggtgtttaaagtgtttatggctttctaaaaaacatttttcaataaatattttaaatttataagttgatttaggatgat 52398530  T
Q  862 tttggtcacttccatccttatgcttgtgtattgctgaagattcgcaagttgatgagccatccctaattcata 933  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  52398529 tttgatcacttccatccttatgcttgtgtattgctgaagattcgcaagttgatgaaccatccctagttcata 52398458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 8348247 - 8347945
Alignment:
Q  7 aagaaaatcaatcgtgtttataaagatccaaaacaaacaaacataatcaaactcagaaattgcatcaagcaattattaacaagccatagaatttatggcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8348247 aagaaaatcaatcgtgtttataaagatccaaaacaaacaaacataatcaaactcagaaactgcatcaagcaattattaacaagccatagaatttatggcc 8348148  T
Q  107 atggaggcagagagaaaagacagcaattattattgnnnnnnnnnnnnnnnngaacagatnnnnnnnntgggttgatgagaattaatacaatgcagatgtt 206  Q
    ||||||||||||||  |||||| ||||||||||||                ||||||||        |||||||||||||||||||||||||||| ||||    
T  8348147 atggaggcagagag--aagacaacaattattattgtttattttttatttttgaacagat-aaaaaaatgggttgatgagaattaatacaatgcaggtgtt 8348051  T
Q  207 gtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  8348050 gtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggttgcaattcattctcaccattctcacatacaaaagccattctcatgtgatat 8347951  T
Q  307 gccccc 312  Q
    | ||||    
T  8347950 gtcccc 8347945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 8348679 - 8348791
Alignment:
Q  204 gttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtga 303  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  8348679 gttgtttaaattgaaatttaaaatctccaccatctaaatttaatccaatggctgcaattcattctcaccattctcacatacaaaagccattctcatgtga 8348778  T
Q  304 tatgcccccatat 316  Q
    |||||||||||||    
T  8348779 tatgcccccatat 8348791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 29691647 - 29691536
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    |||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||  || ||||||| |    
T  29691647 ttaacagtagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaatggatgcaaaatat 29691548  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  29691547 aaggactaaaaa 29691536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 590 - 699
Target Start/End: Original strand, 35166834 - 35166943
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||||||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||||| | ||||||| ||| ||| ||||||||||||    
T  35166834 ttaacagcagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgctgggattatttttcgaagggacgcaaaatgt 35166933  T
Q  690 aaggactaaa 699  Q
    ||| ||||||    
T  35166934 aagcactaaa 35166943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 3296654 - 3296554
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||||||||||||||||||    
T  3296654 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggaatattcttcaaaggggcgcaaaatgtaaggactaaaa 3296555  T
Q  701 a 701  Q
    |    
T  3296554 a 3296554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 51906787 - 51906898
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| ||| |||||||||||||||| | ||||||| ||| ||||||||||||| ||||||| ||| || || ||||||||||||   ||||||||||    
T  51906787 ttaacagcagaaactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgagatgtagggactattcttcaaaggagcgcaaaatgt 51906886  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  51906887 aaggactaaaaa 51906898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 3296923 - 3297023
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| | | ||||||||||||| ||||||||| | || || |||||||||||| | |||||||||||||||||||||    
T  3296923 gactaattttgataacggagataaaatgtaaggattttaaaaacatttaatgaaacgtagggactattcttcaaagggtcgcaaaatgtaaggactaaaa 3297022  T
Q  701 a 701  Q
    |    
T  3297023 a 3297023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 30608612 - 30608712
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||  ||||| |||||||||||| | | |||||||||||| ||||||    
T  30608612 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaagaggcacaaaatgtaaggtctaaaa 30608711  T
Q  701 a 701  Q
    |    
T  30608712 a 30608712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 48554007 - 48553907
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| |||||||||||   ||||||||||| |  || |||||||||||| |||||||||||||||||||||||    
T  48554007 gactaattttgataacggagataaaatgtgaggattttaaaaaggtttaatgaaatgtatggactattcttcaaagggacgcaaaatgtaaggactaaaa 48553908  T
Q  701 a 701  Q
    |    
T  48553907 a 48553907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 615 - 700
Target Start/End: Original strand, 25917031 - 25917116
Alignment:
Q  615 acgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||| |||||||||||| |||||||||||| ||||||||||| |  ||||||||||||||  |||||||||||| ||||||||||    
T  25917031 acgaagataaaatatgaaaattttaaaaacatttaatgaaatgtatggattattcttcaaatagacgcaaaatgtgaggactaaaa 25917116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 598 - 691
Target Start/End: Complemental strand, 30608359 - 30608266
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaa 691  Q
    |||||||||||||||||||| | ||||||| ||| ||||||||||| |  |||||||||| || || ||||||||||| |||||||||||||||    
T  30608359 agagactaattttgataacggagataaaatgtgaggattttaaaaatatataatgaaatgtagggactattcttcaaaatgacgcaaaatgtaa 30608266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 609 - 702
Target Start/End: Complemental strand, 38759807 - 38759714
Alignment:
Q  609 ttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaaa 702  Q
    ||||||||| | ||||||| ||| ||||||||||||| ||||||||||| | ||| |||||||||||| | |||||||| ||||||||||||||    
T  38759807 ttgataacggagataaaatttgaggattttaaaaacatttaatgaaatgtatagactattcttcaaagaggcgcaaaatttaaggactaaaaaa 38759714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 7118143 - 7118243
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||| | | ||||||| |||  |||||||||||| ||||||||||| |  || |||||||||||| | |||||||||||||||||||||    
T  7118143 gactaattttgataatggagataaaatttgagaattttaaaaacatttaatgaaatgtatggactattcttcaaaggggcgcaaaatgtaaggactaaaa 7118242  T
Q  701 a 701  Q
    |    
T  7118243 a 7118243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 51906531 - 51906431
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| ||| ||||||||| ||||||||| | || || |||||||||||| | |||||||||||| ||||||||    
T  51906531 gactaattttgataacggagataaaatgtgaggatattaaaaacatttaatgaaacgtagggactattcttcaaagaggcgcaaaatgtaaagactaaaa 51906432  T
Q  701 a 701  Q
    |    
T  51906431 a 51906431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 50464605 - 50464543
Alignment:
Q  250 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  50464605 aatggctgcaattcattctcaccattctcacgtacaaaagccattctcatgtgatatgccccc 50464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 590 - 702
Target Start/End: Complemental strand, 26168114 - 26168003
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||||||||||||||||||| | ||||||| ||| ||||||||||| | ||||| ||||| ||| | ||||||| |||  | ||||||||||    
T  26168114 ttaacagcagagactaattttgataacggagataaaatgtgaggattttaaaaatatttaat-aaatgtagaaactattctttaaaagggcgcaaaatgt 26168016  T
Q  690 aaggactaaaaaa 702  Q
    || ||||||||||    
T  26168015 aatgactaaaaaa 26168003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 41510179 - 41510079
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||| | | ||||||||||| ||||||| ||| | ||||| ||||| || || |||||||||||| | ||||||||||||||| |||||    
T  41510179 gactaattttgataagggagataaaatatgaggattttagaaatatttaataaaatgtagggactattcttcaaaggggcgcaaaatgtaaggattaaaa 41510080  T
Q  701 a 701  Q
    |    
T  41510079 a 41510079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 600 - 691
Target Start/End: Complemental strand, 34129106 - 34129015
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaa 691  Q
    ||||||| |||||||||||| |||||||||||  |||||||||||  ||||| ||||  || || |||||||||||| ||||||||||||||    
T  34129106 agactaactttgataacgaagataaaatatgagaattttaaaaacgtttaataaaatatagggactattcttcaaagggacgcaaaatgtaa 34129015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 601 - 693
Target Start/End: Original strand, 34129279 - 34129371
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaagg 693  Q
    ||||||||||||||||  | ||||||| ||| ||||||||||| | ||||||||||| || || ||||||||||| ||  |||||||||||||    
T  34129279 gactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaattggtgcaaaatgtaagg 34129371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 56303785 - 56303733
Alignment:
Q  258 caattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 310  Q
    ||||| ||||||  |||||||| ||||||||||||||||||||||||||||||    
T  56303785 caatttattctcgccattctcacatacaaaagtcattctcatgtgatatgccc 56303733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 590 - 657
Target Start/End: Original strand, 1791516 - 1791583
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    ||||||| ||||||||||||| |||||| | ||||||| | ||||||||||||||| ||||| |||||    
T  1791516 ttaacagcagagactaattttaataacggagataaaatgtaaagattttaaaaacatttaataaaatg 1791583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 26168371 - 26168473
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcag--agattattcttcaaagtgacgcaaaatgtaaggactaa 698  Q
    |||||||||||||||| || ||||||| || |||||||| ||||| ||||| ||||| ||   || |||||| ||||| | ||||||||||||||| |||    
T  26168371 gactaattttgataacaaagataaaatgtggagattttagaaacatttaataaaatgtaggaggactattctacaaaggggcgcaaaatgtaaggattaa 26168470  T
Q  699 aaa 701  Q
    |||    
T  26168471 aaa 26168473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 598 - 657
Target Start/End: Original strand, 30047992 - 30048051
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    ||||||||||||| |||||| | ||||||||||| ||||||||||| | |||||||||||    
T  30047992 agagactaattttaataacggagataaaatatgaggattttaaaaatatttaatgaaatg 30048051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 598 - 657
Target Start/End: Original strand, 30062333 - 30062392
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    ||||||||||||| |||||| | ||||||||||| ||||||||||| | |||||||||||    
T  30062333 agagactaattttaataacggagataaaatatgaggattttaaaaatatttaatgaaatg 30062392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 601 - 696
Target Start/End: Original strand, 30952980 - 30953075
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggact 696  Q
    |||||||||| |||||  | ||||||| | | ||||||||||||| ||||||||||| || ||  ||||||| ||| | |||||||||||||||||    
T  30952980 gactaattttaataaccgagataaaatgttaggattttaaaaacatttaatgaaatgtagggaccattcttctaagaggcgcaaaatgtaaggact 30953075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 39819461 - 39819403
Alignment:
Q  254 gctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||||||| ||||||| ||||||||||||    |||||||||||||||||||||||||    
T  39819461 gctgcaatttattctcaccattctcatataagttagtcattctcatgtgatatgccccc 39819403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 30938021 - 30937972
Alignment:
Q  258 caattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    ||||| |||||||||||||||| ||| | |||||||||||||||||||||    
T  30938021 caatttattctcatcattctcacatatagaagtcattctcatgtgatatg 30937972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 602 - 643
Target Start/End: Complemental strand, 34397758 - 34397717
Alignment:
Q  602 actaattttgataacgaaaataaaatatgaagattttaaaaa 643  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  34397758 actaattttgataacgaagataaaatatgaggattttaaaaa 34397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 604 - 701
Target Start/End: Original strand, 48760097 - 48760194
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||  | ||||||| ||||||||||||||||| |||||||| || |   | |||||||||||  |||||| ||| |||| ||||||||    
T  48760097 taattttgataacagagataaaatgtgaagattttaaaaacatttaatgaattgtacgaactattcttcaaaaagacgcacaatataagaactaaaaa 48760194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 936 - 1009
Target Start/End: Complemental strand, 52398399 - 52398322
Alignment:
Q  936 atttctcttacgtta-ttgt-gactatcagtttttcttaagt-aattactgactatcatg-acgcaacaataggcaca 1009  Q
    ||||||||||||||| |||| |||||||| ||| |||||||| ||||||||||||||||| ||||||||| |||||||    
T  52398399 atttctcttacgttaattgttgactatcaatttctcttaagttaattactgactatcatgaacgcaacaacaggcaca 52398322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 665 - 701
Target Start/End: Complemental strand, 1791368 - 1791332
Alignment:
Q  665 tattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1791368 tattcttcaaagtcacgcaaaatgtaaggactaaaaa 1791332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 633 - 701
Target Start/End: Original strand, 29691750 - 29691818
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||| ||||||| | ||| |||| || ||||| ||||||||||||||||| |||||    
T  29691750 gattttaaaaacatttattgaaatgtaaagactattttttaaagtcacgcaaaatgtaaggaccaaaaa 29691818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 629 - 701
Target Start/End: Complemental strand, 34294533 - 34294463
Alignment:
Q  629 tgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||||||| ||||||||||| || || |||||||||||  ||| |||||||||| |||||||||    
T  34294533 tgaagattttaaaaacatttaatgaaatgtag-gactattcttcaaatggacacaaaatgtaa-gactaaaaa 34294463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 56106440 - 56106540
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||| |||||| | |||||||  || ||||||||||||| ||||| ||||  ||  | |||||||||||| | | |||||||||| ||||||||    
T  56106440 gactaattttaataacggagataaaatgagaggattttaaaaacatttaataaaatataggaactattcttcaaaggggcacaaaatgtaaagactaaaa 56106539  T
Q  701 a 701  Q
    |    
T  56106540 a 56106540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 348
Target Start/End: Original strand, 49489237 - 49489272
Alignment:
Q  313 atatatactggtgcccccactattcatattttctgg 348  Q
    ||||||| ||||||||||||||||||||||||||||    
T  49489237 atatatattggtgcccccactattcatattttctgg 49489272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 662 - 708
Target Start/End: Original strand, 10580134 - 10580179
Alignment:
Q  662 gattattcttcaaagtgacgcaaaatgtaaggactaaaaaacatatt 708  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||    
T  10580134 gattattcttcaaagtcactcaaaatgtaaggac-aaaaaacatatt 10580179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 604 - 701
Target Start/End: Original strand, 35469045 - 35469142
Alignment:
Q  604 taattttgataacgaaaataaaa-tatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||| | |||||| | ||| ||||||||||||  ||||||||||| |  ||||||||||||| | | ||| ||||||||||| ||||||    
T  35469045 taattttgataacggagataaaaatttgaggattttaaaaact-ttaatgaaatgtaaggattattcttcaatggggcgcgaaatgtaaggattaaaaa 35469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 56304379 - 56304444
Alignment:
Q  253 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    |||| ||||| ||| ||| |||| ||| |||||||||||||||||||||||||| |||| |||||||    
T  56304379 ggctccaatttattatcaccattttcaaatacaaaagtcattctcatgtgatat-cccctatatata 56304444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 17288384 - 17288449
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaa 698  Q
    ||||||||||||| ||| ||||||| || || |||| ||||||||  ||||||||||| |||||||    
T  17288384 gattttaaaaacatttattgaaatgtagggactattattcaaagtagcgcaaaatgtagggactaa 17288449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 54142404 - 54142339
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaa 698  Q
    ||||||||||||| ||| ||||||| |  || |||||||||||||  ||||||||||| |||||||    
T  54142404 gattttaaaaacatttattgaaatgtatggactattcttcaaagtcgcgcaaaatgtagggactaa 54142339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 5e-47; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 2296546 - 2296414
Alignment:
Q  174 tgggttgatgagaattaatacaatgcagatgttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatca 273  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||| ||    
T  2296546 tgggttgatgagaattaatacaatgcaggtgttgtttaaattgaagtttaaaatctccaccatctaaatttaatctaattactgcaattcattctcacca 2296447  T
Q  274 ttctcatatacaaaagtcattctcatgtgatat 306  Q
    |||||| ||||||||  ||||||||||||||||    
T  2296446 ttctcacatacaaaacccattctcatgtgatat 2296414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 590 - 699
Target Start/End: Complemental strand, 21113151 - 21113042
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||||||||||||||||| | | ||||||| |||  |||||||||||| ||||||||||| ||||| ||||||||||   | ||||||||||    
T  21113151 ttaacagcagagactaattttgataaaggagataaaatgtgagaattttaaaaacatttaatgaaatgtagagactattcttcaatagggcgcaaaatgt 21113052  T
Q  690 aaggactaaa 699  Q
    ||||||||||    
T  21113051 aaggactaaa 21113042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 5974122 - 5974022
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||| |||||| ||||||||| ||  ||||||||||||| ||||||||||| || || |||||||||||| |  ||||||| ||||||||||||    
T  5974122 gactaattttaataacggaaataaaatgtggggattttaaaaacatttaatgaaatgtagggactattcttcaaaggggtgcaaaatataaggactaaaa 5974023  T
Q  701 a 701  Q
    |    
T  5974022 a 5974022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 604 - 701
Target Start/End: Complemental strand, 1869559 - 1869462
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| ||| |||||| || ||||||  | | |||||||||||||||||    
T  1869559 taattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagaaattattttttaaagtggtgtagaatgtaaggactaaaaa 1869462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 4510298 - 4510199
Alignment:
Q  603 ctaattttgataacgaaaataaaatatgaag-attttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||||  | |||||||||| || |||||||||||| ||||||||||| || || |||||||||||  | || |||||||||||||||||||    
T  4510298 ctaattttgataaccgagataaaatatggaggattttaaaaacatttaatgaaatgtagggactattcttcaaataggcgtaaaatgtaaggactaaaaa 4510199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 8710320 - 8710419
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||| ||||||||| |||||| ||  ||||||||||||| ||||||||||| |  || |||||||||||| |  ||||||| ||||||||||||    
T  8710320 gactaattttaataacgaaa-taaaatgtggggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggtgcaaaatataaggactaaaa 8710418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 7645950 - 7646061
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || ||||||||||||||||| | ||||||| |||  ||||| |||||| ||| ||||||| |  || ||||||||||||   | ||||||||    
T  7645950 ttaacagcagggactaattttgataacggagataaaatgtgagaatttttaaaacatttattgaaatgtaaggactattcttcaaaggagcacaaaatgt 7646049  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  7646050 aaggactaaaaa 7646061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 623 - 701
Target Start/End: Complemental strand, 211530 - 211452
Alignment:
Q  623 aaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||| ||| |||||||||| || ||||||||||| |  || |||||||||||| | ||||||||||||||||||||||    
T  211530 aaaatgtgaggattttaaaatcatttaatgaaatgtacggactattcttcaaaggggcgcaaaatgtaaggactaaaaa 211452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 602 - 700
Target Start/End: Complemental strand, 14712767 - 14712670
Alignment:
Q  602 actaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||| |||||| | ||||||||| | ||||| ||||||| ||||| ||||  || ||||||||||||||| | || ||||||||||||||||||    
T  14712767 actaatttttataacgcatataaaatataaggatttaaaaaacatttaataaaatatag-gattattcttcaaagaggcgtaaaatgtaaggactaaaa 14712670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 647 - 701
Target Start/End: Original strand, 17157858 - 17157912
Alignment:
Q  647 ttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||| || || |||||||||||||| ||||||||||||||||||||||    
T  17157858 ttaatgaaatgtagggactattcttcaaagtggcgcaaaatgtaaggactaaaaa 17157912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 211689 - 211800
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaac-agttaatgaaatgcagagattattcttcaaagtgacgcaaaatg 688  Q
    |||||||||| || |||||| ||||| | | ||||||| |||||||||||||||  | ||||||||||| || || |||||||||||  | |||||||||    
T  211689 ttaacagtagggattaattt-gataatggagataaaatgtgaagattttaaaaaatatttaatgaaatgtagggactattcttcaaataggcgcaaaatg 211787  T
Q  689 taaggactaaaaa 701  Q
    |||||| ||||||    
T  211788 taaggattaaaaa 211800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 22721982 - 22721926
Alignment:
Q  250 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatat 306  Q
    ||||||| ||||| |||||||||||||||||||| |||| |||||||||||| ||||    
T  22721982 aatggctacaatttattctcatcattctcatatataaaaatcattctcatgtcatat 22721926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 14712974 - 14713085
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||||||||||||||||||  | |||||||||||  ||||  |||||| ||||||||||| |  || |||||||||||    ||||||||||    
T  14712974 ttaacagcagagactaattttgataacagagataaaatatgagcatttctaaaacatttaatgaaatgtaaggactattcttcaaaagagcgcaaaatgt 14713073  T
Q  690 aaggactaaaaa 701  Q
    ||| | ||||||    
T  14713074 aagaattaaaaa 14713085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 17157668 - 17157557
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || |||||||||||||||   | ||||||| ||| ||||||||||| | ||||||||||| |  || |||||||||| | | || |||||||    
T  17157668 ttaacagcagtgactaattttgataatagagataaaatgtgaggattttaaaaatatttaatgaaatgtatggactattcttcaatgaggcgtaaaatgt 17157569  T
Q  690 aaggactaaaaa 701  Q
    ||| ||||||||    
T  17157568 aagaactaaaaa 17157557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 25932190 - 25932094
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | |||||||   | |||||||||||    ||||||||||||| || ||||||||||||  | ||||||||||| ||||||||    
T  25932190 gactaattttgataacggagataaaatgcaaggattttaaaaa----taatgaaatgcagggactattcttcaaaggaaagcaaaatgtaaagactaaaa 25932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 9956099 - 9956057
Alignment:
Q  264 attctcatcattctcatatacaaaagtcattctcatgtgatat 306  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  9956099 attctcatcattctcacatacaaaagtcattctcatgggatat 9956057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 30322441 - 30322383
Alignment:
Q  252 tggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 310  Q
    ||||||||||||||||||| |||||||| |||  | | |||||||||||||||||||||    
T  30322441 tggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgccc 30322383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 633 - 701
Target Start/End: Complemental strand, 14712909 - 14712841
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||| ||||||| |  || |||| ||||||||||||||||||||| |||| |||||    
T  14712909 gattttaaaaacatttattgaaatgtaaggactatttttcaaagtgacgcaaaatgtagggaccaaaaa 14712841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 18100579 - 18100536
Alignment:
Q  264 attctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||||||||||||||||| |||  ||||||||||||||||||    
T  18100579 attctcatcattctcatataaaaagttcattctcatgtgatatg 18100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 15294703 - 15294654
Alignment:
Q  263 cattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||||||||||||||| |||  |  ||||||||||||||||||||||||    
T  15294703 cattctcatcattctcacataagatggtcattctcatgtgatatgccccc 15294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 19579213 - 19579278
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaa 698  Q
    ||||||||||||| ||| ||||||||||||| ||||||| |||  |  |||||||||| |||||||    
T  19579213 gattttaaaaacatttattgaaatgcagagactattctttaaaaaggtgcaaaatgtatggactaa 19579278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 7e-46; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 190 - 312
Target Start/End: Complemental strand, 47895545 - 47895423
Alignment:
Q  190 aatacaatgcagatgttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatcattctcatatacaaaag 289  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  47895545 aatacaatgcaggtattgtttaaattgaaatttaaaatctccaccatctaaatttaatccaatggctgcaattcattctcaccattctcacatacaaaag 47895446  T
Q  290 tcattctcatgtgatatgccccc 312  Q
     ||||||||||||||||||||||    
T  47895445 ccattctcatgtgatatgccccc 47895423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 9880595 - 9880495
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||| | |||||||||| || ||||||||||||||||||||    
T  9880595 gactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtagagacttttcttcaaagggatgcaaaatgtaaggactaaaa 9880496  T
Q  701 a 701  Q
    |    
T  9880495 a 9880495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 590 - 702
Target Start/End: Complemental strand, 50359246 - 50359135
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||| ||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||| || || |||||||| || || |||||||| |    
T  50359246 ttaacagcagag-ctaattttgataacggaaataaaatgtgaagatttaaaaaacatttaatgaaatgtagggactattcttcgaattggcgcaaaatat 50359148  T
Q  690 aaggactaaaaaa 702  Q
    |||||||||||||    
T  50359147 aaggactaaaaaa 50359135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 591 - 701
Target Start/End: Complemental strand, 5683282 - 5683172
Alignment:
Q  591 taacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgta 690  Q
    |||||| || ||||||||||||||| ||| ||||||| ||| ||||||||| ||| ||||||||||| || || |||| ||||||| |||||||||||||    
T  5683282 taacagcagggactaattttgataatgaagataaaatgtgaggattttaaatacatttaatgaaatgtagggactatttttcaaagagacgcaaaatgta 5683183  T
Q  691 aggactaaaaa 701  Q
    |||| ||||||    
T  5683182 aggattaaaaa 5683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 594 - 701
Target Start/End: Complemental strand, 18179997 - 18179890
Alignment:
Q  594 cagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaagg 693  Q
    |||||||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||  |  || |||| ||||||| |  |||||||||||||    
T  18179997 cagtagagactaattttgataacggagataaaatgtgaggattttaaaaacaattaatgaaatataaggactatttttcaaaggggtgcaaaatgtaagg 18179898  T
Q  694 actaaaaa 701  Q
    ||||||||    
T  18179897 actaaaaa 18179890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 590 - 700
Target Start/End: Original strand, 31436351 - 31436461
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||||||||||||||||||| | ||||||| |||  |||||||||||| ||||| ||||  || || |||||||||||  ||| ||||||||    
T  31436351 ttaacagcagagactaattttgataacggagataaaatgtgataattttaaaaacatttaataaaatatagtgactattcttcaaaaggacacaaaatgt 31436450  T
Q  690 aaggactaaaa 700  Q
    |||||||||||    
T  31436451 aaggactaaaa 31436461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 604 - 701
Target Start/End: Complemental strand, 47541626 - 47541529
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||| ||| ||||||| ||| ||||||||||||| ||||||||||  || || |||||||||||| |||  |||||||||||||||||||    
T  47541626 taattttgataatgaatataaaatgtgaggattttaaaaacatttaatgaaatatagggactattcttcaaagggacataaaatgtaaggactaaaaa 47541529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 18180257 - 18180357
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||| ||||| ||||| |  || |||||||||||||| |||||||| ||| || |||||    
T  18180257 gactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatgtatggactattcttcaaagtggcgcaaaatataaagattaaaa 18180356  T
Q  701 a 701  Q
    |    
T  18180357 a 18180357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 5683529 - 5683640
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || |||||||||||||| || | |||||||| || ||||||||||| | ||||||||||| || || |||||||||||  |||| ||||| |    
T  5683529 ttaacagcagtgactaattttgataccggagataaaatacgaggattttaaaaatatttaatgaaatgtagggactattcttcaaaaagacgtaaaatat 5683628  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  5683629 aaggactaaaaa 5683640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 600 - 675
Target Start/End: Original strand, 19895778 - 19895853
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaa 675  Q
    |||||||||||||||||||| |||||||||||  |||||||||||| ||||| ||||| ||||| |||||||||||    
T  19895778 agactaattttgataacgaagataaaatatgagaattttaaaaacatttaataaaatgtagagactattcttcaaa 19895853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 5172856 - 5172756
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtga-cgcaaaatgtaaggactaaa 699  Q
    |||||| |||||||||| | ||||||| | | ||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||| ||||||    
T  5172856 gactaaatttgataacgtagataaaatgtaaggattttaaaaacatttaatgaaatgtagagactattcttcaaa-tgagcgcaaaatgtaagaactaaa 5172758  T
Q  700 aa 701  Q
    ||    
T  5172757 aa 5172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 6751321 - 6751433
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacg-caaaatg 688  Q
    ||||||| ||||||||||||||||||| || ||||||| ||| ||||||||||| | ||||||||||| |  || | ||||| |||| |||| |||||||    
T  6751321 ttaacagcagagactaattttgataacaaagataaaatgtgaggattttaaaaaaatttaatgaaatgtaaggacttttctttaaagggacgccaaaatg 6751420  T
Q  689 taaggactaaaaa 701  Q
    ||| |||||||||    
T  6751421 taatgactaaaaa 6751433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 37403347 - 37403278
Alignment:
Q  250 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    ||||||| ||||||||||||| |||||||||||| ||  ||||||||||| ||| |||||||||||||||    
T  37403347 aatggctacaattcattctcaccattctcatatataactgtcattctcatatgacatgcccccatatata 37403278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 598 - 694
Target Start/End: Original strand, 50359415 - 50359511
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaagga 694  Q
    |||||||||||||||||||  | ||||||| ||| ||||||||||||| ||||||||||  |  || |||||||||||  | |||||||||||||||    
T  50359415 agagactaattttgataacagagataaaatgtgaggattttaaaaacatttaatgaaataaaaggactattcttcaaatgggcgcaaaatgtaagga 50359511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 19895522 - 19895411
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||||| |||||||||||||||||| | ||||||| ||| | ||||||||||| ||||| ||||| |  || |||||||||||    |  |||||||    
T  19895522 ttaacagtatagactaattttgataacggagataaaatgtgagggttttaaaaacatttaattaaatgtatggactattcttcaaacgagcataaaatgt 19895423  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  19895422 aaggactaaaaa 19895411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 601 - 699
Target Start/End: Complemental strand, 6751158 - 6751060
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    ||||||||||||||||| | |||||||  || |||||| |||||| ||||||||||  |  ||||||||||||||| | | |||||||||| |||||||    
T  6751158 gactaattttgataacggagataaaatgcgatgatttttaaaacatttaatgaaatataaggattattcttcaaagaggcacaaaatgtaaagactaaa 6751060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 3591316 - 3591416
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtga-cgcaaaatgtaaggactaaa 699  Q
    |||||||||| |||| | | ||||||| ||| ||||||||||||| ||||| ||||| |  || ||||||||||| ||| ||||||||||||||||||||    
T  3591316 gactaatttttataatggagataaaatgtgaggattttaaaaacatttaataaaatgtatggactattcttcaaa-tgagcgcaaaatgtaaggactaaa 3591414  T
Q  700 aa 701  Q
    ||    
T  3591415 aa 3591416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 604 - 701
Target Start/End: Original strand, 4288422 - 4288514
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||||| ||||||| ||| ||||||||||||| ||     |||| || || |||||||||||| | |||||||| |||||||||||||    
T  4288422 taattttgataacgaatataaaatgtgaggattttaaaaacattt-----aatgtagggactattcttcaaaggggcgcaaaatataaggactaaaaa 4288514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 29406861 - 29406805
Alignment:
Q  251 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    ||||||| |||||||||||||||||||||||||  || ||||||||||| |||||||    
T  29406861 atggctgtaattcattctcatcattctcatataagaatgtcattctcatatgatatg 29406805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 633 - 701
Target Start/End: Original strand, 36793585 - 36793653
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||| | ||||| ||||| ||||||||||||| ||||||||| || ||||||||||    
T  36793585 gattttaaaaacatttattaaaatgtagagactattcttcaaagtcacgcaaaatatagggactaaaaa 36793653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 48155258 - 48155358
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||  | ||||||| ||||||||||||||||| ||||||||||  ||  |  |||||||||||   |||||||| |||||| |||||    
T  48155258 gactaattttgataacatagataaaatgtgaagattttaaaaacatttaatgaaatataggaacaattcttcaaaggagcgcaaaatataaggattaaaa 48155357  T
Q  701 a 701  Q
    |    
T  48155358 a 48155358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 662 - 701
Target Start/End: Original strand, 18180146 - 18180185
Alignment:
Q  662 gattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  18180146 gattattcttcaaagtcacgcaaaatgtaaggactaaaaa 18180185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 21783332 - 21783286
Alignment:
Q  266 tctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  21783332 tctcaccattctcacatacaaaagccattctcatgtgatatgccccc 21783286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 9880758 - 9880869
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtga-cgcaaaatg 688  Q
    ||||||| || ||||||||||||||||  | ||||||| |||  |||||||||||| ||||| ||||  ||| | ||||||||||| ||| |||||||||    
T  9880758 ttaacagcagggactaattttgataacagagataaaatgtgagaattttaaaaacatttaataaaatatagaaactattcttcaaa-tgagcgcaaaatg 9880856  T
Q  689 taaggactaaaaa 701  Q
    |||| | ||||||    
T  9880857 taagaattaaaaa 9880869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 34083179 - 34083227
Alignment:
Q  264 attctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||| ||||||||||  |||||||||||||||||||||||||| ||||    
T  34083179 attcttatcattctcacctacaaaagtcattctcatgtgatatggcccc 34083227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 665 - 708
Target Start/End: Complemental strand, 9880705 - 9880662
Alignment:
Q  665 tattcttcaaagtgacgcaaaatgtaaggactaaaaaacatatt 708  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||    
T  9880705 tattcttcaaagtaacgcaaaatgtagggaccaaaaaacatatt 9880662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 598 - 657
Target Start/End: Complemental strand, 48155087 - 48155028
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    ||||| ||||||||||| || | ||||||||||| ||||||||||||| ||||| |||||    
T  48155087 agagattaattttgatatcggagataaaatatgaggattttaaaaacatttaataaaatg 48155028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 19895652 - 19895598
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaat 687  Q
    ||||||||||||| ||| ||||||||| ||| |||| |||||||| |||||||||    
T  19895652 gattttaaaaacatttattgaaatgcaaagactatttttcaaagtcacgcaaaat 19895598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 27789364 - 27789434
Alignment:
Q  242 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    |||||| | |||||||||||| ||||||| |||||||| |||    | |||||||||||||||||||||||    
T  27789364 tttaatccgatggctgcaatttattctcaccattctcacataagttactcattctcatgtgatatgccccc 27789434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 38194311 - 38194249
Alignment:
Q  255 ctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatata 317  Q
    |||||||| ||||||| ||||||||||||  | | ||||| ||||||||||||||||| ||||    
T  38194311 ctgcaatttattctcaccattctcatataagatactcattttcatgtgatatgcccccctata 38194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 701
Target Start/End: Complemental strand, 45664803 - 45664698
Alignment:
Q  596 gtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtga-cgcaaaatgtaagga 694  Q
    |||||||||| ||||||||||| |   ||||| ||  ||||||||||||| ||| | ||||| ||||| ||||||||||| ||| || |||||||| |||    
T  45664803 gtagagactatttttgataacggagtaaaaatgtggggattttaaaaacatttattaaaatgtagagactattcttcaaa-tgagcgtaaaatgtaggga 45664705  T
Q  695 ctaaaaa 701  Q
    |||||||    
T  45664704 ctaaaaa 45664698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 45528439 - 45528395
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgata 305  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||    
T  45528439 attcattctcaccattctcatata-acaagtcattctcatgtgata 45528395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 4e-32; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 22948846 - 22948957
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    |||||| ||||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| ||||| |||||||||||| | ||||||||||    
T  22948846 ttaacaatagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagagactattcttcaaagggtcgcaaaatgt 22948945  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  22948946 aaggactaaaaa 22948957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 600 - 701
Target Start/End: Complemental strand, 32092340 - 32092239
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    ||||||||||||||||| || | ||||| ||| ||||||||||||| |||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  32092340 agactaattttgataacaaacacaaaatgtgaggattttaaaaacatttaatgaaatgcagggactattcttcaaagaggcgcaaaatgtaaggactaaa 32092241  T
Q  700 aa 701  Q
    ||    
T  32092240 aa 32092239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 600 - 700
Target Start/End: Complemental strand, 11974776 - 11974676
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| | ||| |||| |||||||   ||||||||||||||||||||    
T  11974776 agactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtacagactatttttcaaaggagcgcaaaatgtaaggactaaa 11974677  T
Q  700 a 700  Q
    |    
T  11974676 a 11974676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 17075596 - 17075696
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||  | | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||||||||||||||||||    
T  17075596 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 17075695  T
Q  701 a 701  Q
    |    
T  17075696 a 17075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 44803611 - 44803711
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| |||  |||||||||||| ||||||||||| ||||| ||||||| ||||   |||||||||||||||||||||    
T  44803611 gactaattttgataacggagataaaatgtgagaattttaaaaacatttaatgaaatgtagagactattctttaaagaagcgcaaaatgtaaggactaaaa 44803710  T
Q  701 a 701  Q
    |    
T  44803711 a 44803711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 20544033 - 20543922
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| ||| |||||||||||||||| | ||||||||||| ||||||||||| | ||||||||||| || || |||||||||||| | | ||||||||    
T  20544033 ttaacagcagaaactaattttgataacggagataaaatatgaggattttaaaaaaatttaatgaaatgtagggactattcttcaaaggggcacaaaatgt 20543934  T
Q  690 aaggactaaaaa 701  Q
    ||| | ||||||    
T  20543933 aagaattaaaaa 20543922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 5029733 - 5029832
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||||||| || | ||||||| ||| ||||| ||||||| ||||||||||  || || |||||||||||| |||||||||||||| ||||||||    
T  5029733 gactaattttgatagcggagataaaatgtgaggattt-aaaaacatttaatgaaatatagggactattcttcaaagagacgcaaaatgtaacgactaaaa 5029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 17075330 - 17075230
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||| |||||   ||||||| ||| ||||||||||||  ||||||||||| || || |||||||||||| | |||||||| ||||||||||||    
T  17075330 gactaattttgttaacggggataaaatgtgaggattttaaaaacttttaatgaaatgtagggactattcttcaaagcggcgcaaaatataaggactaaaa 17075231  T
Q  701 a 701  Q
    |    
T  17075230 a 17075230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 23548986 - 23549086
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| ||||||||| ||| ||||| ||||| | ||||||||||  ||||| |||||||||||  | ||||||||||||| | |||||    
T  23548986 gactaattttgataacggaaataaaatttgaggatttcaaaaagatttaatgaaatatagagagtattcttcaaaagggcgcaaaatgtaagaaataaaa 23549085  T
Q  701 a 701  Q
    |    
T  23549086 a 23549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 42750097 - 42750197
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||| |||||| | ||||||| ||| ||||||||||||  ||||||||||| || || |||||||||||| | || ||||||||| ||||||||    
T  42750097 gactaattttaataacggagataaaatgtgaggattttaaaaacgtttaatgaaatgtagggactattcttcaaaggggcgtaaaatgtaaagactaaaa 42750196  T
Q  701 a 701  Q
    |    
T  42750197 a 42750197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 602 - 701
Target Start/End: Original strand, 10466759 - 10466858
Alignment:
Q  602 actaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||| | | ||||||| ||| ||||||||||||| ||||| ||||  ||||| |||||||||||  |||||||||||||| || ||||||    
T  10466759 actaattttgataatggagataaaatgtgacgattttaaaaacatttaataaaatatagagactattcttcaaatagacgcaaaatgtaaagattaaaaa 10466858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 594 - 657
Target Start/End: Original strand, 32092501 - 32092564
Alignment:
Q  594 cagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    |||||||||||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||||    
T  32092501 cagtagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatg 32092564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 49053858 - 49053960
Alignment:
Q  600 agactaattttgataacgaaaa-taaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaa 698  Q
    |||||||||||||||| ||||| |||||  ||| ||||||||||||  ||||||||||| || ||||||| ||||||| |||  ||||||||||||| ||    
T  49053858 agactaattttgataatgaaaaataaaacgtgaggattttaaaaacttttaatgaaatgtagggattatttttcaaagagacttaaaatgtaaggacgaa 49053957  T
Q  699 aaa 701  Q
    |||    
T  49053958 aaa 49053960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 20544290 - 20544389
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||| |||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| |  || |||||||||||  |  ||||||| ||||||||||||    
T  20544290 gactgattttgataacgaagataaaatgtga-gattttaaaaacatttaatgaaatgtaaggactattcttcaaaaaggtgcaaaatataaggactaaaa 20544388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 598 - 701
Target Start/End: Complemental strand, 28852807 - 28852704
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    |||| |||||||||||||||   ||||||| ||| ||||||||||||| ||||||||||| || || |||| || |||  ||| ||||||||||||| ||    
T  28852807 agaggctaattttgataacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggagtattatttaaatggacacaaaatgtaaggatta 28852708  T
Q  698 aaaa 701  Q
    ||||    
T  28852707 aaaa 28852704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 598 - 676
Target Start/End: Original strand, 11975039 - 11975117
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaag 676  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||| ||| | | ||| |||| |||||||    
T  11975039 agagactaattttgataacggaaataaaatgtgaggattttaaaaacatttaataaaacgtaaagactatttttcaaag 11975117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 18152865 - 18152767
Alignment:
Q  603 ctaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||||| | ||||||| ||| |||||||| |||| ||||  ||||| || || |||||||||||| | ||||||||||||| ||| ||||    
T  18152865 ctaattttgataacggagataaaatgtgaggattttaagaacatttaacaaaatgtagggactattcttcaaaggggcgcaaaatgtaagaactgaaaa 18152767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 1469032 - 1469097
Alignment:
Q  254 gctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    ||||||||| ||||||| |||||||| |||    ||||||||||||||||||||||||||||||||    
T  1469032 gctgcaatttattctcaccattctcacataagttagtcattctcatgtgatatgcccccatatata 1469097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 28838463 - 28838366
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||||  | ||   |||||||||| ||| |||||||||| ||||||||    
T  28838463 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtcggga--cttcttcaaag-gacacaaaatgtaaagactaaaa 28838367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 604 - 701
Target Start/End: Complemental strand, 28854785 - 28854688
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||  ||||||||| ||| ||||||||||||| ||||| ||||| || || ||||||| |||  | |||||||| |||||| ||||||    
T  28854785 taattttgataactgaaataaaatgtgaggattttaaaaacatttaataaaatgtagggagtattctttaaatgggcgcaaaatataaggattaaaaa 28854688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 623 - 687
Target Start/End: Original strand, 16755634 - 16755698
Alignment:
Q  623 aaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaat 687  Q
    ||||||||| ||||||||||| | ||||||||||  ||||| |||||||||||||| ||||||||    
T  16755634 aaaatatgaggattttaaaaatatttaatgaaatatagagactattcttcaaagtggcgcaaaat 16755698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 634 - 701
Target Start/End: Complemental strand, 30938673 - 30938606
Alignment:
Q  634 attttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||| ||||| ||||| |  |||||||||| |||| | ||||||||||||||||||||||    
T  30938673 attttaaaaacatttaataaaatgtatggattattctttaaagaggcgcaaaatgtaaggactaaaaa 30938606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 32303858 - 32303901
Alignment:
Q  264 attctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  32303858 attctcaccattctcacatacaaaagtcattctcatgtgatatg 32303901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 708
Target Start/End: Original strand, 44803498 - 44803544
Alignment:
Q  662 gattattcttcaaagtgacgcaaaatgtaaggactaaaaaacatatt 708  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||    
T  44803498 gattattcttcaaagtcacgcaaaatgtagggaccaaaaaacatatt 44803544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 634 - 694
Target Start/End: Original strand, 27311060 - 27311120
Alignment:
Q  634 attttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaagga 694  Q
    |||||||||||| ||||||||||| || || ||||||| |||| | |||||||||||||||    
T  27311060 attttaaaaacatttaatgaaatgtagggactattctttaaagaggcgcaaaatgtaagga 27311120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 31238929 - 31238977
Alignment:
Q  259 aattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||||||||||||||||||||||  || ||||||||||| |||||||    
T  31238929 aattcattctcatcattctcatataagaatgtcattctcatatgatatg 31238977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 15894729 - 15894683
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgatat 306  Q
    |||||||||||||||||||||||| | | ||||||||||| ||||||    
T  15894729 attcattctcatcattctcatataaacatgtcattctcatatgatat 15894683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 15899346 - 15899392
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgatat 306  Q
    |||||||||||||||||||||||| | | ||||||||||| ||||||    
T  15899346 attcattctcatcattctcatataaacatgtcattctcatatgatat 15899392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 647 - 701
Target Start/End: Complemental strand, 23548119 - 23548065
Alignment:
Q  647 ttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||| || |||||||||||||||   |||||||| |||||||||||||    
T  23548119 ttaatgaaatgtagggattattcttcaaagaagcgcaaaatataaggactaaaaa 23548065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 601 - 643
Target Start/End: Complemental strand, 49053592 - 49053550
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaa 643  Q
    ||||||||||||||||||| |||||||||||  ||||||||||    
T  49053592 gactaattttgataacgaagataaaatatgagaattttaaaaa 49053550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 710
Target Start/End: Original strand, 6621115 - 6621202
Alignment:
Q  621 ataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaaacatattga 710  Q
    ||||||| ||| |||||||||| || ||||||||||| || || |||||||||||| | | |||||||||| || | |||||||||||||    
T  6621115 ataaaatgtgaggattttaaaa-catttaatgaaatgtagggactattcttcaaagggtcacaaaatgtaa-gaattaaaaacatattga 6621202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 600 - 701
Target Start/End: Complemental strand, 2517525 - 2517424
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    |||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| ||||||||||||||||||||||    
T  2517525 agactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagagacgcaaaatgtaaggactaaa 2517426  T
Q  700 aa 701  Q
    ||    
T  2517425 aa 2517424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 2191328 - 2191228
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| |  || |||||||||||| | |||||||||||||||||||||    
T  2191328 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggcgcaaaatgtaaggactaaaa 2191229  T
Q  701 a 701  Q
    |    
T  2191228 a 2191228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 3691368 - 3691468
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| || || |||||||||||| | ||||||||  |||||||||||    
T  3691368 gactaattttgataacggagataaaatgtgaagattttaaaaacatttaatgaaatgtagggactattcttcaaaggggcgcaaaatacaaggactaaaa 3691467  T
Q  701 a 701  Q
    |    
T  3691468 a 3691468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 598 - 701
Target Start/End: Complemental strand, 21182421 - 21182318
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    |||||||||||||||||||  | ||||||| |||| |||||||||||| ||||||||||| |  || |||||||||||| | ||||||||||||||||||    
T  21182421 agagactaattttgataacagagataaaatgtgaaaattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggcgcaaaatgtaaggacta 21182322  T
Q  698 aaaa 701  Q
    ||||    
T  21182321 aaaa 21182318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 21217034 - 21216934
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||  | | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||||||||||||||||||    
T  21217034 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 21216935  T
Q  701 a 701  Q
    |    
T  21216934 a 21216934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 21217300 - 21217400
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||| |||||   ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||||||||||||||||||    
T  21217300 gactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcggcgcaaaatgtaaggactaaaa 21217399  T
Q  701 a 701  Q
    |    
T  21217400 a 21217400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 21265102 - 21265002
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||| |||||   ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||||||||||||||||||    
T  21265102 gactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcggcgcaaaatgtaaggactaaaa 21265003  T
Q  701 a 701  Q
    |    
T  21265002 a 21265002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 21265368 - 21265468
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||  | | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||||||||||||||||||    
T  21265368 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 21265467  T
Q  701 a 701  Q
    |    
T  21265468 a 21265468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 39729584 - 39729685
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    |||||||||| ||||||| | ||||||| ||| ||||||||||| | ||||||||||  | ||| ||||||||||| ||||||||||| |||||||||||    
T  39729584 agactaatttcgataacggagataaaatgtgaggattttaaaaatatttaatgaaatataaagactattcttcaaactgacgcaaaatataaggactaaa 39729683  T
Q  700 aa 701  Q
    ||    
T  39729684 aa 39729685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 21267347 - 21267447
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||| ||| ||||||| ||| |||||| |||||| ||||||||||| || || ||||||||||||   || ||||||||||||||||||    
T  21267347 gactaattttgataatgaatataaaatgtgaggatttttaaaacatttaatgaaatgtagggactattcttcaaaggatcgaaaaatgtaaggactaaaa 21267446  T
Q  701 a 701  Q
    |    
T  21267447 a 21267447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 24093267 - 24093167
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||| |||||||||||||| | || || ||| ||||||||||||| ||||||||||| || || |||||||||||| | |||||| ||||||||||||||    
T  24093267 gactgattttgataacgaagagaagatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaaggggcgcaaagtgtaaggactaaaa 24093168  T
Q  701 a 701  Q
    |    
T  24093167 a 24093167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 3691194 - 3691094
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||||||||||   ||||||| ||| ||||||||||||| ||||||||||| ||  | |||||||||||  | |||||||| ||||||||||||    
T  3691194 gactaattttgataacggtgataaaatgtgaggattttaaaaacatttaatgaaatgtaggaactattcttcaaaagggcgcaaaatataaggactaaaa 3691095  T
Q  701 a 701  Q
    |    
T  3691094 a 3691094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 590 - 697
Target Start/End: Original strand, 10706619 - 10706724
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || ||||| ||||||||||| | ||||||| ||| ||||||||||| | ||||||||||  | ||| |||||||||||| | ||||||||||    
T  10706619 ttaacagcagggactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaat--atagactattcttcaaaggggcgcaaaatgt 10706716  T
Q  690 aaggacta 697  Q
    ||||||||    
T  10706717 aaggacta 10706724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 32114287 - 32114177
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    |||||||||| |||||||||||||| |  | ||||||| ||| ||||||||||||| |||||  | || || || |||||||||||| | || |||||||    
T  32114287 ttaacagtagcgactaattttgatatcagagataaaatgtgaggattttaaaaacatttaatagattgtagggactattcttcaaag-ggcgtaaaatgt 32114189  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  32114188 aaggactaaaaa 32114177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 621 - 701
Target Start/End: Complemental strand, 7083613 - 7083533
Alignment:
Q  621 ataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||| ||| ||||||||||| | ||||||||||| || || |||||||||||  |||| |||||||||||| ||||||    
T  7083613 ataaaatgtgaggattttaaaaaaatttaatgaaatgtagggactattcttcaaatggacgtaaaatgtaaggattaaaaa 7083533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 30517189 - 30517121
Alignment:
Q  242 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 310  Q
    |||||| | |||||||||||| |||||||||||||||| ||| |  | |||||||||||||||||||||    
T  30517189 tttaatccgatggctgcaatttattctcatcattctcacataaattactcattctcatgtgatatgccc 30517121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 37911584 - 37911532
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||||||| ||||||||||||||  ||| |||||||||||||||||||||||    
T  37911584 attcattcttatcattctcatataagaaattcattctcatgtgatatgccccc 37911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 6204347 - 6204289
Alignment:
Q  251 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcc 309  Q
    |||||||||||||||||||| |||||||| |||  | | ||||||||||||||||||||    
T  6204347 atggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgcc 6204289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 36780883 - 36780925
Alignment:
Q  265 ttctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  36780883 ttctcaccattctcacatacaaaagtcattctcatgtgatatg 36780925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 601 - 657
Target Start/End: Original strand, 2606635 - 2606691
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    |||||||||||||| || | |||||||||||  |||||||||||| |||||||||||    
T  2606635 gactaattttgatagcggagataaaatatgagaattttaaaaacatttaatgaaatg 2606691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 32114450 - 32114550
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||  | ||||| | |||  |||||||||| | ||||||||||| |  || |||||||  ||| | |||||||||||||||||||||    
T  32114450 gactaattttgataacagagataaagtgtgagaattttaaaaatatttaatgaaatgtaaggactattctttgaagaggcgcaaaatgtaaggactaaaa 32114549  T
Q  701 a 701  Q
    |    
T  32114550 a 32114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 665 - 708
Target Start/End: Complemental strand, 3691304 - 3691261
Alignment:
Q  665 tattcttcaaagtgacgcaaaatgtaaggactaaaaaacatatt 708  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||    
T  3691304 tattcttcaaagttacgcaaaatgtagggaccaaaaaacatatt 3691261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 634 - 701
Target Start/End: Original strand, 10710842 - 10710909
Alignment:
Q  634 attttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||| ||| |||||||||  |  ||||||||||||| ||||||||| ||||||| |||||    
T  10710842 attttaaaaacatttattgaaatgcaagggctattcttcaaagtcacgcaaaatataaggaccaaaaa 10710909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 20463500 - 20463542
Alignment:
Q  264 attctcatcattctcatatacaaaagtcattctcatgtgatat 306  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||    
T  20463500 attcttatcattctcttatacaaaagtcattttcatgtgatat 20463542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 32860923 - 32860825
Alignment:
Q  603 ctaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||| ||| | ||||||| | | ||||||||||||| ||||||||||  |  || |||| ||||||| |||||||||| ||| | |||||||    
T  32860923 ctaattttgatcacggagataaaatgttaggattttaaaaacatttaatgaaatataacgactatttttcaaagggacgcaaaatataaaggctaaaaa 32860825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 701
Target Start/End: Complemental strand, 2191466 - 2191401
Alignment:
Q  636 tttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||| ||| | ||||| |  |||||||||||||||| | ||||||||||||||| |||||    
T  2191466 tttaaaaacatttattaaaatgtaaggattattcttcaaagtcaagcaaaatgtaaggaccaaaaa 2191401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 598 - 698
Target Start/End: Complemental strand, 51471449 - 51471349
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    |||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| ||| | |||||||||||| ||||||||||||||| ||||    
T  51471449 agagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagaaactattcttcaaagggacgcaaaatgtaagaacta 51471350  T
Q  698 a 698  Q
    |    
T  51471349 a 51471349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 13637597 - 13637487
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||| |||| |||||||   ||||||||||    
T  13637597 ttaacggtaaagactaattttgataacgaagataaaatatgaagattttaaaaatatttaatgaaatgca-agactattattcaaagaagcgcaaaatgt 13637499  T
Q  690 aaggactaaaaa 701  Q
    || || ||||||    
T  13637498 aaagattaaaaa 13637487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 697
Target Start/End: Original strand, 13637759 - 13637855
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    ||||| ||||||||||| | ||||||| ||| ||||||||||| | ||||||||||| ||||| |||||||||||| | ||||||||||||||||||    
T  13637759 gactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatgtagagactattcttcaaaggggcgcaaaatgtaaggacta 13637855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 22814407 - 22814307
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| |  || |||||||||||| | ||||||||||||| | |||||    
T  22814407 gactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtatggactattcttcaaaggggcgcaaaatgtaagaattaaaa 22814308  T
Q  701 a 701  Q
    |    
T  22814307 a 22814307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 43933551 - 43933451
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||| || || |||||||||||  | | |||||||||||||||||||    
T  43933551 gactaattttgataacgaagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaacgggcacaaaatgtaaggactaaaa 43933452  T
Q  701 a 701  Q
    |    
T  43933451 a 43933451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 604 - 710
Target Start/End: Complemental strand, 25770429 - 25770324
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaaac 703  Q
    |||||||||||||||  ||||||| ||| |||| |||||||| ||||||||||| || || |||||||||||| ||  |||||||||||||||| |||||    
T  25770429 taattttgataacgatgataaaatgtgaggattctaaaaacatttaatgaaatgtagggactattcttcaaagggatacaaaatgtaaggacta-aaaac 25770331  T
Q  704 atattga 710  Q
    |||||||    
T  25770330 atattga 25770324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 601 - 702
Target Start/End: Complemental strand, 37172192 - 37172091
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||| | ||| ||||||||||||| ||||||||||| ||||| ||||||| |||    |||||||||||||||||||||    
T  37172192 gactaattttgataacggagataaactgtgaggattttaaaaacatttaatgaaatgtagagactattctttaaataagcgcaaaatgtaaggactaaaa 37172093  T
Q  701 aa 702  Q
    ||    
T  37172092 aa 37172091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 604 - 701
Target Start/End: Original strand, 44504368 - 44504465
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| |  || |||||||||||| |  |||||||||||||||||||||    
T  44504368 taattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggtgcaaaatgtaaggactaaaaa 44504465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 598 - 701
Target Start/End: Original strand, 9218490 - 9218592
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    |||||||||||| ||||||||| ||||||| ||| ||||||||||||| ||||||||||  || || ||||||||||||   |||||||||||| |||||    
T  9218490 agagactaattt-gataacgaagataaaatgtgatgattttaaaaacatttaatgaaatatagggactattcttcaaaggagcgcaaaatgtaatgacta 9218588  T
Q  698 aaaa 701  Q
    ||||    
T  9218589 aaaa 9218592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 598 - 697
Target Start/End: Original strand, 34743446 - 34743545
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    |||||||||||||||||||  | ||||||| ||| |||||| |||||| ||||||||||| |  ||| ||||||||||| |||||||| |||||||||||    
T  34743446 agagactaattttgataacatatataaaatgtgaggatttttaaaacatttaatgaaatgtaaggataattcttcaaagggacgcaaagtgtaaggacta 34743545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 602 - 701
Target Start/End: Original strand, 43933708 - 43933806
Alignment:
Q  602 actaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||||  | ||||||||||| ||||||||||||| ||||||||| | ||||| |||| ||||||  |||||||||||| |||||||||||    
T  43933708 actaattttgataacagagataaaatatgaggattttaaaaacatttaatgaaa-gtagagactatttttcaaatggacgcaaaatgtgaggactaaaaa 43933806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 601 - 699
Target Start/End: Complemental strand, 44504203 - 44504105
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||| | ||||||||||| || || |||||||||||  ||| ||||||||||| ||||||    
T  44504203 gactaattttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaatggacacaaaatgtaagaactaaa 44504105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 601 - 700
Target Start/End: Complemental strand, 9217931 - 9217832
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||| |||||| | ||||||| ||| ||||||||||||| ||||||||||| || || ||||||||||||   |||||||| || |||||||||    
T  9217931 gactaattttaataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcagcgcaaaatatatggactaaaa 9217832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 590 - 708
Target Start/End: Complemental strand, 50732347 - 50732230
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || ||||||||||||||||| | |||||||  || ||||||||||| | ||||||||||| |  || |||| |||||||   ||||||||||    
T  50732347 ttaacagcagggactaattttgataacggagataaaatgcgaggattttaaaaatatttaatgaaatgtatggactatttttcaaaggagcgcaaaatgt 50732248  T
Q  690 aaggactaaaaaacatatt 708  Q
    ||||| |||||||||||||    
T  50732247 aagga-taaaaaacatatt 50732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 590 - 708
Target Start/End: Original strand, 50780508 - 50780625
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || ||||||||||||||||| | |||||||  || ||||||||||| | ||||||||||| |  || |||| |||||||   ||||||||||    
T  50780508 ttaacagcagggactaattttgataacggagataaaatgcgaggattttaaaaatatttaatgaaatgtatggactatttttcaaaggagcgcaaaatgt 50780607  T
Q  690 aaggactaaaaaacatatt 708  Q
    ||||| |||||||||||||    
T  50780608 aagga-taaaaaacatatt 50780625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 35652225 - 35652273
Alignment:
Q  264 attctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  35652225 attctcaccattctcacatacaaaagtcattctcatgtgatatgccccc 35652273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 40935908 - 40935968
Alignment:
Q  251 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccc 311  Q
    |||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||||    
T  40935908 atggctgcaatttattctcaccattctcacatacaaatgtcattctcatgtgacatgcccc 40935968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 26741283 - 26741379
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||  | ||||||| ||| ||||||||||||    ||||||||| | ||| |||||||||||| | ||||||| ||||||||| |||    
T  26741283 gactaattttgataacagagataaaatgtgaggattttaaaaac----aatgaaatgtaaagactattcttcaaaggggcgcaaaacgtaaggacttaaa 26741378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 7565330 - 7565372
Alignment:
Q  265 ttctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  7565330 ttctcatcattctcacatacaaaaatcattctcatgtgatatg 7565372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 25770694 - 25770795
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtga-cgcaaaatgtaaggactaa 698  Q
    ||||||||||| |||||| | ||||||||| || |||||||||||| ||||| ||||| ||  | ||||||||||| |||  |||||||||||||| |||    
T  25770694 agactaatttttataacggagataaaatataaatattttaaaaacatttaataaaatgtaggaactattcttcaaa-tgagtgcaaaatgtaaggattaa 25770792  T
Q  699 aaa 701  Q
    |||    
T  25770793 aaa 25770795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 611 - 676
Target Start/End: Original strand, 51755903 - 51755968
Alignment:
Q  611 gataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaag 676  Q
    ||||||| | ||||||| ||| ||||||||||||| ||||||||||| || || ||||||||||||    
T  51755903 gataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaag 51755968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 633 - 701
Target Start/End: Complemental strand, 25770573 - 25770505
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||| ||||||| | ||| |||| |||||| | |||||||||||||||| ||||||    
T  25770573 gattttaaaaacatttattgaaatgtaaagactatttttcaaaatcacgcaaaatgtaaggattaaaaa 25770505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 600 - 701
Target Start/End: Complemental strand, 27013521 - 27013424
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    ||||||||| |||||||| | ||||||| | | ||||||||||||| ||||| ||||||||  | |||||||||    ||| |||||||||| |||||||    
T  27013521 agactaattgtgataacggagataaaatgtaaggattttaaaaacatttaataaaatgcaggaactattcttca----gactcaaaatgtaaagactaaa 27013426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 37172455 - 37172555
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||||||||   | ||||||| || |||||||||||||| ||||| || || ||  |||||||||||||| |||| |||| | ||||| |||||    
T  37172455 gactaattttgataatagagataaaatgtggagattttaaaaacatttaataaagtgtaggaattattcttcaaagggacgtaaaacgcaaggattaaaa 37172554  T
Q  701 a 701  Q
    |    
T  37172555 a 37172555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 633 - 699
Target Start/End: Original strand, 132070 - 132136
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    ||||||||||||| ||||||||||| |  || ||||||||||||    |||||||||||||||||||    
T  132070 gattttaaaaacatttaatgaaatgtaaggactattcttcaaaggagtgcaaaatgtaaggactaaa 132136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 22980062 - 22980020
Alignment:
Q  265 ttctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||| |||||||| ||| |||||||||||||||||||||||    
T  22980062 ttctcaccattctcacatataaaagtcattctcatgtgatatg 22980020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 32834370 - 32834404
Alignment:
Q  313 atatatactggtgcccccactattcatattttctg 347  Q
    ||||||| |||||||||||||||||||||||||||    
T  32834370 atatatattggtgcccccactattcatattttctg 32834404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 647 - 701
Target Start/End: Original strand, 45728342 - 45728396
Alignment:
Q  647 ttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||| |  || |||||||||||| ||| ||||||||||||||||||||    
T  45728342 ttaatgaaatgtatggactattcttcaaagggacacaaaatgtaaggactaaaaa 45728396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 24162710 - 24162677
Alignment:
Q  20 gtgtttataaagatccaaaacaaacaaacataat 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  24162710 gtgtttatatagatccaaaacaaacaaacataat 24162677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 24163347 - 24163380
Alignment:
Q  20 gtgtttataaagatccaaaacaaacaaacataat 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  24163347 gtgtttatatagatccaaaacaaacaaacataat 24163380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 48868598 - 48868663
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaa 698  Q
    ||||||||||||| ||| ||||||| || || |||| ||||||||  ||||||||||| |||||||    
T  48868598 gattttaaaaacatttattgaaatgtagggactattattcaaagtagcgcaaaatgtagggactaa 48868663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 55201599 - 55201632
Alignment:
Q  20 gtgtttataaagatccaaaacaaacaaacataat 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  55201599 gtgtttatatagatccaaaacaaacaaacataat 55201632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 108090 - 108201
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| |||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| ||  || ||||||||||  | ||||||||||    
T  108090 ttaacagcagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaggaataattcttcaaaagggcgcaaaatgt 108189  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  108190 aaggactaaaaa 108201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 107833 - 107733
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||| ||||||||||| | ||||||| ||| ||||||||||| | ||| ||||||| || || ||||||||||||   |||||| ||||||| ||||||    
T  107833 gactatttttgataacggagataaaatgtgaggattttaaaaatatttattgaaatgtagggactattcttcaaaggagcgcaaagtgtaaggtctaaaa 107734  T
Q  701 a 701  Q
    |    
T  107733 a 107733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 5e-25; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 6298003 - 6298114
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    |||||| ||| ||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||| |  || |||||||||||| || |||||||||    
T  6298003 ttaacaatagggactaattttgataacggaaataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaagggaagcaaaatgt 6298102  T
Q  690 aaggactaaaaa 701  Q
    ||| ||||||||    
T  6298103 aagcactaaaaa 6298114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 6297841 - 6297941
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| |  || ||||||||||||| |||||||||||| |||| ||||    
T  6297841 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaagtcacgcaaaatgtagggacgaaaa 6297940  T
Q  701 a 701  Q
    |    
T  6297941 a 6297941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 9800161 - 9800050
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| | |||||||||||||||||| | || |||| ||| ||||||||||||| ||||| ||||| |  ||||||||||||||| | |||||||| |    
T  9800161 ttaacagcaaagactaattttgataacggagatgaaatgtgaggattttaaaaacatttaataaaatgtaaggattattcttcaaagaggcgcaaaatct 9800062  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  9800061 aaggactaaaaa 9800050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 26997837 - 26997948
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || ||||||||||||||||| | ||||||| ||| ||||||||||| | ||||||||||| |  || |||||||||||  ||||||||||||    
T  26997837 ttaacagcagggactaattttgataacggagataaaatgtgaggattttaaaaataattaatgaaatgtatggactattcttcaaatggacgcaaaatgt 26997936  T
Q  690 aaggactaaaaa 701  Q
    ||| ||||||||    
T  26997937 aagaactaaaaa 26997948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 604 - 701
Target Start/End: Original strand, 7344838 - 7344935
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||| | ||||||||||| |||||||||||||  |||| ||||| |  ||||||||||||||| | | ||||||||||||||||||||    
T  7344838 taattttgataacggacataaaatatgaggattttaaaaacatataataaaatgtatggattattcttcaaaggggcacaaaatgtaaggactaaaaa 7344935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 17914308 - 17914208
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||  | ||||||| ||| ||||||||||||| ||||| ||||| || || |||||||||||| |||||||||||||| |||| |||    
T  17914308 gactaattttgataacagagataaaatgtgaggattttaaaaacatttaataaaatgtagggactattcttcaaagagacgcaaaatgtaaagacttaaa 17914209  T
Q  701 a 701  Q
    |    
T  17914208 a 17914208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 601 - 699
Target Start/End: Complemental strand, 6297573 - 6297475
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    ||||||||||||||||  | | ||||| ||| ||||||||||||| ||||||||||| ||  | |||||||||||| | ||||||||||||||||||||    
T  6297573 gactaattttgataacagagagaaaatgtgaggattttaaaaacatttaatgaaatgtaggaactattcttcaaaggggcgcaaaatgtaaggactaaa 6297475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 13315311 - 13315213
Alignment:
Q  603 ctaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||||  | ||||||| ||| ||||||||||||| ||||||||||| || || ||||||| |||  | ||||||||||||||||||||||    
T  13315311 ctaattttgataacagagataaaatgtgatgattttaaaaacatttaatgaaatgtagggactattctttaaatgggcgcaaaatgtaaggactaaaaa 13315213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 590 - 700
Target Start/End: Complemental strand, 16662290 - 16662180
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    |||||||||| |||||||||| |||||  | ||||||| |||  |||||||||||| ||||||||||| || || ||||||||||||   ||||||||||    
T  16662290 ttaacagtagggactaattttaataacagagataaaatgtgagaattttaaaaacatttaatgaaatgtagggactattcttcaaaggagcgcaaaatgt 16662191  T
Q  690 aaggactaaaa 700  Q
    ||| |||||||    
T  16662190 aagaactaaaa 16662180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 605 - 701
Target Start/End: Original strand, 26243378 - 26243474
Alignment:
Q  605 aattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||| | | ||||||| ||| ||||||||||||| ||||||||||  ||||| ||||||||||||   |||||||| |||||||||||||    
T  26243378 aattttgataatggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaaggagcgcaaaatataaggactaaaaa 26243474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 602 - 701
Target Start/End: Original strand, 9800323 - 9800422
Alignment:
Q  602 actaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||||||||| ||||||| | | ||||||||||||| ||||||||||  |  || |||||||||||| | ||||||||| |||||| |||||    
T  9800323 actaattttgataacgaagataaaatgtaaggattttaaaaacatttaatgaaatatatggactattcttcaaaggggcgcaaaatgcaaggaccaaaaa 9800422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 590 - 675
Target Start/End: Complemental strand, 12489350 - 12489265
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaa 675  Q
    ||||||| ||||||||||||||||||| || |||||||  || ||||||||||| | ||||||||||| || || |||||||||||    
T  12489350 ttaacagcagagactaattttgataacaaagataaaatgcgaggattttaaaaatatttaatgaaatgtagggactattcttcaaa 12489265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 10047589 - 10047490
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||| |||  |||||||||||| |||||| |||| || || |||||||||||  | ||||||||||||||| |||||    
T  10047589 gactaattttgataacggagataaaatgtgagaattttaaaaacatttaatg-aatgtagggactattcttcaaaagggcgcaaaatgtaaggattaaaa 10047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 42757396 - 42757466
Alignment:
Q  242 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    |||||| |||||||| ||||| |||||||  ||||||||||| ||| ||||||||||||||||||| ||||    
T  42757396 tttaatccaatggctacaatttattctcactattctcatatataaatgtcattctcatgtgatatgtcccc 42757466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 10047856 - 10047957
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    |||||||||||||||||| | |||||||||||| |||||||||| | ||||||| ||  | ||| ||||||||||||    | |||||||||||| ||||    
T  10047856 agactaattttgataacggagataaaatatgaaaattttaaaaatatttaatgatatataaagactattcttcaaaggagtggaaaatgtaaggattaaa 10047955  T
Q  700 aa 701  Q
    ||    
T  10047956 aa 10047957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 12296210 - 12296133
Alignment:
Q  242 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    |||||| | |||||||||||| ||||||| |||||||| |||    || |||||||||||||||||||||||||||||    
T  12296210 tttaatccgatggctgcaatttattctcaccattctcacataagttagccattctcatgtgatatgcccccatatata 12296133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 590 - 655
Target Start/End: Complemental strand, 21005844 - 21005779
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaa 655  Q
    ||||||| | ||| |||||||||||||| | ||||||||||||||||||||||| | |||||||||    
T  21005844 ttaacaggaaagaataattttgataacggagataaaatatgaagattttaaaaaaatttaatgaaa 21005779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 17915475 - 17915585
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| | |||||||||||||||||  | ||||||| ||| ||||| ||||||| ||||| ||||| | ||  ||||||||||||   | ||||||||    
T  17915475 ttaacagcaaagactaattttgataacagagataaaatgtgaggatttaaaaaacatttaataaaatgta-aggatattcttcaaaggagcacaaaatgt 17915573  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  17915574 aaggactaaaaa 17915585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 16662473 - 16662550
Alignment:
Q  624 aaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||  |||||||||||| ||||||||||| ||  | |||||||||||    ||||||||||||||||||||||    
T  16662473 aaatatgagaattttaaaaacatttaatgaaatgtaggaactattcttcaaaagagcgcaaaatgtaaggactaaaaa 16662550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 605 - 694
Target Start/End: Original strand, 21006105 - 21006194
Alignment:
Q  605 aattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaagga 694  Q
    ||||||||||||| | ||||||| ||| ||||||||||||| ||||| ||||| || || |||| ||||||| | |  ||||||||||||    
T  21006105 aattttgataacggagataaaatgtgaggattttaaaaacatttaataaaatgtagggactatttttcaaaggggccaaaaatgtaagga 21006194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 633 - 701
Target Start/End: Complemental strand, 4624612 - 4624544
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||| ||||||| | ||| ||||||||||||| | ||||||| ||||||| |||||    
T  4624612 gattttaaaaacatttattgaaatgtaaagactattcttcaaagtcatgcaaaatataaggaccaaaaa 4624544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 633 - 701
Target Start/End: Original strand, 12489538 - 12489605
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||||||||||| |  || ||||||||| |  ||||||||||||||||||||||||    
T  12489538 gattttaaaaaca-ttaatgaaatgtaaggactattcttcataacgacgcaaaatgtaaggactaaaaa 12489605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 633 - 701
Target Start/End: Complemental strand, 26720400 - 26720332
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||| | ||||||||||| || || ||||||||||||   ||||||||||| ||||||||||    
T  26720400 gattttaaaaatatttaatgaaatgtagggactattcttcaaaggagcgcaaaatgtagggactaaaaa 26720332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 29702582 - 29702535
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||||||||||||| |||||||  |||||||||||||| |||||||    
T  29702582 attcattctcatcattttcatataacaaagtcattctcatatgatatg 29702535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 35020886 - 35020933
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||||||| ||||||||| ||| || ||||||||||||||||||||    
T  35020886 attcattctcgtcattctcacataaaatagtcattctcatgtgatatg 35020933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 8744249 - 8744299
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 310  Q
    ||||||||||||||||||||||||  || ||||||||||  ||||||||||    
T  8744249 attcattctcatcattctcatataagaatgtcattctcacatgatatgccc 8744299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 12300205 - 12300275
Alignment:
Q  242 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    |||||| | |||||||||||| ||||||| |||||||| |||    || ||||||||||||||||||||||    
T  12300205 tttaatccgatggctgcaatttattctcaccattctcacataagttagccattctcatgtgatatgccccc 12300275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 21348345 - 21348411
Alignment:
Q  253 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    ||||| |||| ||||||| |||||||| |||  | |  |||||||||||||||||||||||||||||    
T  21348345 ggctgtaatttattctcaccattctcacataagatacccattctcatgtgatatgcccccatatata 21348411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 35751651 - 35751688
Alignment:
Q  262 tcattctcatcattctcatatacaaaagtcattctcat 299  Q
    |||||||||||||||||||||| || ||||||||||||    
T  35751651 tcattctcatcattctcatataaaatagtcattctcat 35751688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 37810382 - 37810321
Alignment:
Q  250 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccc 311  Q
    |||||||| |||||||||  ||||||||||  || |||  ||||||||||||||||||||||    
T  37810382 aatggctgtaattcattcatatcattctcacctataaatatcattctcatgtgatatgcccc 37810321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 44024336 - 44024236
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtga-cgcaaaatgtaaggactaaa 699  Q
    |||||||||||||||||   ||||||| ||| ||||||||||||| ||  ||||||| |  || ||||||||||| |||  ||||||| |||||||||||    
T  44024336 gactaattttgataacggggataaaatgtgatgattttaaaaacatttggtgaaatgtatggactattcttcaaa-tgagtgcaaaatttaaggactaaa 44024238  T
Q  700 aa 701  Q
    ||    
T  44024237 aa 44024236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 8e-24; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 87239 - 87340
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    |||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| || || |||||||||||| ||| |||||| |||||||||||    
T  87239 agactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagggacacaaaatataaggactaaa 87338  T
Q  700 aa 701  Q
    ||    
T  87339 aa 87340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 601 - 701
Target Start/End: Original strand, 8750339 - 8750439
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||||||| ||||||||| ||| ||||| ||||| || || ||||||||||||  ||||||||||||||||||||||    
T  8750339 gactaattttgataacggagataaaatatgaggattttaaacacatttaataaaatgtagggactattcttcaaagaaacgcaaaatgtaaggactaaaa 8750438  T
Q  701 a 701  Q
    |    
T  8750439 a 8750439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 3935662 - 3935773
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| ||||||||||||| ||||| || ||||||| ||| ||||||||||||| ||||||||||| || |||||||||||||||   || ||||||     
T  3935662 ttaacagcagagactaattttaataacaaagataaaatgtgaggattttaaaaacaattaatgaaatgtagggattattcttcaaaggagcgtaaaatga 3935761  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  3935762 aaggactaaaaa 3935773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 16284385 - 16284285
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||| ||||| ||||  | ||| |||||||||||   ||||||||||||||||||||||    
T  16284385 gactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatataaagactattcttcaaaaaaacgcaaaatgtaaggactaaaa 16284286  T
Q  701 a 701  Q
    |    
T  16284285 a 16284285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 31176618 - 31176518
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    |||||||||||||||||   ||||||||||| ||||||||||||| ||||||||||| |  || | |||||||||| |||||||||| ||||||||||||    
T  31176618 gactaattttgataacggggataaaatatgacgattttaaaaacatttaatgaaatgtatggactgttcttcaaagggacgcaaaatataaggactaaaa 31176519  T
Q  701 a 701  Q
    |    
T  31176518 a 31176518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 590 - 701
Target Start/End: Original strand, 31588314 - 31588426
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaa-gtgacgcaaaatg 688  Q
    ||||||| || ||||||||||||||||| | ||||||| | | ||||||||||| | ||||||||||| || || ||||||||||| | |||||||||||    
T  31588314 ttaacagcagggactaattttgataacggagataaaatgttaggattttaaaaatatttaatgaaatgtagggactattcttcaaaggggacgcaaaatg 31588413  T
Q  689 taaggactaaaaa 701  Q
    |||||||||||||    
T  31588414 taaggactaaaaa 31588426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 596 - 701
Target Start/End: Complemental strand, 8750126 - 8750021
Alignment:
Q  596 gtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggac 695  Q
    |||||||||||||||||||||||| ||||||  | | ||||||||||| | ||||||||||| || ||||||| ||||||| | ||||||||||||| |     
T  8750126 gtagagactaattttgataacgaagataaaacgttacgattttaaaaatatttaatgaaatgtagggattattattcaaaggggcgcaaaatgtaagaat 8750027  T
Q  696 taaaaa 701  Q
    ||||||    
T  8750026 taaaaa 8750021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 604 - 701
Target Start/End: Original strand, 18999622 - 18999719
Alignment:
Q  604 taattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| || ||||||| ||| ||||||||||| | ||||||||||| |  || ||||||||||| ||| |||||||||||||||||||||    
T  18999622 taattttgataacaaagataaaatgtgaggattttaaaaatatttaatgaaatgtatggactattcttcaaaatgaagcaaaatgtaaggactaaaaa 18999719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 600 - 700
Target Start/End: Original strand, 8648043 - 8648143
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaa 699  Q
    |||||||||||||||||| | | ||||| ||| ||||||||||| | ||||||||||| | ||| |||||||| ||  ||||||||||||||||||||||    
T  8648043 agactaattttgataacggagaaaaaatgtgaggattttaaaaatatttaatgaaatgtaaagactattcttccaaaggacgcaaaatgtaaggactaaa 8648142  T
Q  700 a 700  Q
    |    
T  8648143 a 8648143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 601 - 695
Target Start/End: Complemental strand, 18339184 - 18339090
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggac 695  Q
    ||||||||||||| | | | ||||||| ||| ||||||||||||| ||||||||||  ||||| |||||||||||| | ||||||||||||||||    
T  18339184 gactaattttgatgatggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaaggggcgcaaaatgtaaggac 18339090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 13987405 - 13987293
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaa-cagttaatgaaatgcagagattattcttcaaagtgacgcaaaatg 688  Q
    ||||||| ||||||||||||| |||||| | ||||||| |||  |||||||||| || ||||||||||  |||||||||||||||||  | ||| |||||    
T  13987405 ttaacagcagagactaattttaataacggagataaaatgtgagaattttaaaaaacatttaatgaaatatagagattattcttcaaaagggcgcgaaatg 13987306  T
Q  689 taaggactaaaaa 701  Q
    |||| ||||||||    
T  13987305 taagaactaaaaa 13987293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 35373570 - 35373465
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    ||||||| || |||||||||| ||||||   ||||||||||| ||||||||||| | ||||||||||| ||      |||||||||| ||| ||||||||    
T  35373570 ttaacagcagtgactaattttaataacggggataaaatatgaggattttaaaaatatttaatgaaatgtag------ttcttcaaagggacacaaaatgt 35373477  T
Q  690 aaggactaaaaa 701  Q
    ||||||||||||    
T  35373476 aaggactaaaaa 35373465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 625 - 700
Target Start/End: Original strand, 18340653 - 18340728
Alignment:
Q  625 aatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||||||| ||||||||||| |  || ||||||| |||| | ||||| |||||||||||||||    
T  18340653 aatatgaagattttaaaaacatttaatgaaatgtaaggactattcttaaaaggggcgcaacatgtaaggactaaaa 18340728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 590 - 700
Target Start/End: Original strand, 30415452 - 30415561
Alignment:
Q  590 ttaacagtagagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgt 689  Q
    |||||||  ||| ||||||||||||||| | | ||||| ||| ||||||||||||| ||||||||||| || || |||||||| |||   || |||||||    
T  30415452 ttaacagctgagcctaattttgataacggagacaaaatgtgaggattttaaaaaca-ttaatgaaatgtagggactattcttcgaaggagcgtaaaatgt 30415550  T
Q  690 aaggactaaaa 700  Q
    |||||||||||    
T  30415551 aaggactaaaa 30415561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 34607152 - 34607087
Alignment:
Q  242 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 307  Q
    |||||||  ||||||| |||||||||||||||||||||||||  || ||||||||||| |||||||    
T  34607152 tttaatttgatggctgtaattcattctcatcattctcatataagaatgtcattctcatatgatatg 34607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 633 - 701
Target Start/End: Original strand, 119795 - 119863
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||||||| ||| |||||||||  || ||||||||||||| ||||||||| ||||||| |||||    
T  119795 gattttaaaaacatttattgaaatgcaaggactattcttcaaagtcacgcaaaatataaggaccaaaaa 119863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 18999477 - 18999377
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaa 700  Q
    ||||||||||||||||| | |||||||  || ||||||||||| | ||||||||||| |  || |||||||||||     ||||||||||||||||||||    
T  18999477 gactaattttgataacggagataaaatgagaggattttaaaaatatttaatgaaatgtatggactattcttcaaaagagtgcaaaatgtaaggactaaaa 18999378  T
Q  701 a 701  Q
    |    
T  18999377 a 18999377  T

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Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 31930626 - 31930558
Alignment:
Q  251 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    |||||||||||| ||||||| |||||||| |||  | | |||||||||||||||||||||| |||||||    
T  31930626 atggctgcaatttattctcaccattctcacataagatactcattctcatgtgatatgcccctatatata 31930558  T

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Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 601 - 657
Target Start/End: Complemental strand, 35383351 - 35383295
Alignment:
Q  601 gactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    |||||||||||||||||   ||||||||||| ||||||||||||| |||||||||||    
T  35383351 gactaattttgataacggggataaaatatgaggattttaaaaacatttaatgaaatg 35383295  T

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Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 619 - 701
Target Start/End: Original strand, 20892542 - 20892623
Alignment:
Q  619 aaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||| |||  |||||||||||| ||||| ||| | ||||| ||||||||||| ||||||||||| |||||| ||||||    
T  20892542 aaataaaatgtgataattttaaaaacatttaattaaacgtagagactattcttcaaa-tgacgcaaaatttaaggattaaaaa 20892623  T

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Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 87107 - 87030
Alignment:
Q  624 aaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||| ||||||||||||||||| ||||||||||| || | |||||||||| |   ||||||||| ||| |||||||||    
T  87107 aaatgtgaagattttaaaaacatttaatgaaatgtaggggttattcttcagatgaacgcaaaatataaagactaaaaa 87030  T

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Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 31659046 - 31659099
Alignment:
Q  259 aattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||||||||| ||||    
T  31659046 aatttattctcaccattctcacatacaaatgtcattctcatgtgatatgtcccc 31659099  T

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Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 606 - 701
Target Start/End: Complemental strand, 1650110 - 1650016
Alignment:
Q  606 attttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    |||||||||||| | ||||||||| |  |||||||||||| ||||| ||||| ||| | ||||||||||| || |||||||| |||  ||||||||    
T  1650110 attttgataacggagataaaatataagaattttaaaaacatttaataaaatgtagataatattcttcaaa-tggcgcaaaatataaatactaaaaa 1650016  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 19352550 - 19352496
Alignment:
Q  633 gattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaat 687  Q
    ||||||||||||| ||| |||||||||  || ||||||||||||| |||||||||    
T  19352550 gattttaaaaacatttattgaaatgcaaggactattcttcaaagtcacgcaaaat 19352496  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 33111319 - 33111274
Alignment:
Q  260 attcattctcatcattctcatatacaaaagtcattctcatgtgata 305  Q
    |||||||||||||||||||||||| | | ||||||||||| |||||    
T  33111319 attcattctcatcattctcatataaacatgtcattctcatatgata 33111274  T

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Target: scaffold0063 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 602 - 701
Target Start/End: Original strand, 35172 - 35271
Alignment:
Q  602 actaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggactaaaaa 701  Q
    ||||||||| |||||  | ||||||| ||| ||||||||||||| | ||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  35172 actaattttcataaccgagataaaatgtgaggattttaaaaacattcaataaaatgtagagactattcttcaaagggacgcaaaatgtaaggactaaaaa 35271  T

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Target: scaffold0063; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 598 - 701
Target Start/End: Complemental strand, 34906 - 34803
Alignment:
Q  598 agagactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatgcagagattattcttcaaagtgacgcaaaatgtaaggacta 697  Q
    |||||||||||||||||||| | ||||||| |||  | |||||||||| ||||||||||| |  ||  ||| ||||||  |||||||||| |||||||||    
T  34906 agagactaattttgataacggagataaaatgtgagtactttaaaaacatttaatgaaatgtatggaccattattcaaatagacgcaaaatataaggacta 34807  T
Q  698 aaaa 701  Q
    ||||    
T  34806 aaaa 34803  T

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Target: scaffold0933 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 603 - 546
Alignment:
Q  600 agactaattttgataacgaaaataaaatatgaagattttaaaaacagttaatgaaatg 657  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||    
T  603 agactaattttgataacaaaaataaaatgtgaaaattttaaaaacatttaatgaaatg 546  T

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Target: scaffold0517 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 4729 - 4798
Alignment:
Q  250 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 319  Q
    ||||||| ||||||||||||| |||||||||||| ||  ||||||||||| ||| |||||||||||||||    
T  4729 aatggctacaattcattctcaccattctcatatataactgtcattctcatatgacatgcccccatatata 4798  T

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Target: scaffold0059 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 8986 - 8927
Alignment:
Q  253 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    |||| ||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  8986 ggctccaatttattctcaccattctcacatacaaaagccattctcatgtgatatgccccc 8927  T

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Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 236412 - 236471
Alignment:
Q  253 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 312  Q
    |||| ||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  236412 ggctccaatttattctcaccattctcacatacaaaagccattctcatgtgatatgccccc 236471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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