View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5082-Insertion-12 (Length: 539)
Name: NF5082-Insertion-12
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 225 - 535
Target Start/End: Original strand, 38644974 - 38645289
Alignment:
| Q |
225 |
gggcggaggctagcgtgaccgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggcaaagatgat |
324 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
38644974 |
gggcggaggctagcgtgagcgaccaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattaattatttattgtgcggtcaagatgat |
38645073 |
T |
|
| Q |
325 |
tcacctgtaacttgtttgaacaatt------cctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgc |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38645074 |
tcacctgtaacttgtttgaacaataagtatccctttttggtgaatgctatggtgagacaggggtcatgtacttcacatgtgaggaacaaaatataaccgc |
38645173 |
T |
|
| Q |
419 |
aagatatgatcaattgttagcatctgatgaaattaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataat |
518 |
Q |
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|
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645174 |
aagatatgatcgatggttagcatatgatgaaattaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataa- |
38645272 |
T |
|
| Q |
519 |
tttgttttatctctttc |
535 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38645273 |
tttgttttatctctttc |
38645289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 226 - 520
Target Start/End: Original strand, 13610029 - 13610321
Alignment:
| Q |
226 |
ggcggaggctagcgtgaccgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggcaaagatgatt |
325 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||| ||||||||| || || ||||||||| |
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|
| T |
13610029 |
ggcggaggctagcgtgagcgaccaaaacaggtctctcacagtgcaaattgaattttcaccattggatatattaattatttattatgtggtcaagatgatt |
13610128 |
T |
|
| Q |
326 |
cacctgtaacttgtttgaacaattcctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatat |
425 |
Q |
| |
|
| || | | || || || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13610129 |
cttttgaagaat-----aagtatcccattttggtgaatgctatggtgaggtaggggtcatgtagttcacatgtgag-aacaaaatataaccgcaagatat |
13610222 |
T |
|
| Q |
426 |
gatcaattgttagcatctgatgaaattaatagtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataattt |
520 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| ||| |||||||||||||||||||||||||||| |
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|
| T |
13610223 |
gatcaattgttagcttctgatgaaattaatagtgagaacacatatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataattt |
13610321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 223 - 520
Target Start/End: Original strand, 33641507 - 33641802
Alignment:
| Q |
223 |
atgggcggaggctagcgtgaccgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggcaaagatg |
322 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||| || || |||||| |
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|
| T |
33641507 |
atgggcggaggccagcgtgagcgaccaaaacaggtctctcacgatgcaaattgaattttcaccattggatatattaattatttattatgtggtcaagatg |
33641606 |
T |
|
| Q |
323 |
attcacctgtaacttgtttgaacaattcctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaaga |
422 |
Q |
| |
|
|||| || | | || || || ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
33641607 |
attcttttgaagaat-----aagtatcccatttgggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgag-aacaaaatataaccgcaaga |
33641700 |
T |
|
| Q |
423 |
tatgatcaattgttagcatctgatgaaattaatagtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataat |
518 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||| |
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|
| T |
33641701 |
tatgatcaattgttagcttctgatgaaattaatagtgagaacacatatattttcttttcaaacacaattaatcaaaaattgattttcaaattaaaataat |
33641800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 7e-69; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 4773792 - 4773936
Alignment:
| Q |
48 |
agggatgtgttgaagtttacgctcttctaggttaagtacttaagtatacgccagataatttagatgaagtaggttttagttttatatgcaataatgcaaa |
147 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4773792 |
agggatgtgttgaagttgacgctcttctgggttaagtacttaagtatacgccagatgatttagatgaagtaggttttagttttatatgcaataatgcaaa |
4773891 |
T |
|
| Q |
148 |
ggtcttttggtatagtgatccattaagtctgtttaggcccgtgtt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4773892 |
ggtcttttggtatagtgatccattaagtctgtttaggcccgtgtt |
4773936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 8812774 - 8812680
Alignment:
| Q |
115 |
agtaggttttagttttatatgcaataatgcaaaggtcttttggtatagtgatccattaagtctgtttaggcccgtgtttaagttttgttgtgttt |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| | || ||| |||||||| |||| ||||| ||| || ||||||||||||||| |
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|
| T |
8812774 |
agtaggttttagttttagatgcaataatgcaaaggtcttttgggacagcgattcattaagtttgttcaggcctgtgcttcagttttgttgtgttt |
8812680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 4774199 - 4774242
Alignment:
| Q |
184 |
gcccgtgtttaagttttgttgtgttttggtgatgtttagatggg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4774199 |
gcccgtgtttaagttttgttgtgttttggtgatgtttagatggg |
4774242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 4773715 - 4773753
Alignment:
| Q |
8 |
aataatataatttatactttgttttcaggtgcaagactt |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4773715 |
aataatataatttatactttgttttcaggtgcaagactt |
4773753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 5969429 - 5969379
Alignment:
| Q |
248 |
caaaacaggtctctcacggtgcaaattgagtttgcaccattagatatatta |
298 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
5969429 |
caaaacatgtctctcacggtccaaattgatttttcaccattagatatatta |
5969379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 298
Target Start/End: Complemental strand, 46089728 - 46089686
Alignment:
| Q |
256 |
gtctctcacggtgcaaattgagtttgcaccattagatatatta |
298 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
46089728 |
gtctctcacggtgcaaattgatttttcaccactagatatatta |
46089686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 223 - 520
Target Start/End: Original strand, 54131172 - 54131467
Alignment:
| Q |
223 |
atgggcggaggctagcgtgaccgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggcaaagatg |
322 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||| ||||||||| ||||||||| || || |||||| |
|
|
| T |
54131172 |
atgggcggaggctagcgtgagcgaccaaaacagatctctcacggtgcaaattgaattttcaccattggatatattaattatttattatgtggtcaagatg |
54131271 |
T |
|
| Q |
323 |
attcacctgtaacttgtttgaacaattcctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaaga |
422 |
Q |
| |
|
|||| || | | || || || ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
54131272 |
attcttttgaagaat-----aagtatcccattttggtgaatgctatggtgaggtaggggtcatgtaattcacatgtgag-aacaaaatataaccgcaaga |
54131365 |
T |
|
| Q |
423 |
tatgatcaattgttagcatctgatgaaattaatagtgagaacac----ataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataat |
518 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| | |||| ||| |||||||||||||||||||||||||| |
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|
| T |
54131366 |
tatgatcaattgttagcttctgatgaaattaatagtgagaacacgtatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataat |
54131465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 454
Target Start/End: Complemental strand, 23508471 - 23508368
Alignment:
| Q |
351 |
ctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatatgatcaattgttagcatctgatgaaa |
450 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||| ||||| ||||| |||||||||||||||| ||||||||||||| || | |||||| |||| |
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|
| T |
23508471 |
ctttttggtgaatgctatggtgaggtaggggtaaagtacttcacttgtgatgaacaaaatataaccgtgagatatgatcaatggtcatgatctgaggaaa |
23508372 |
T |
|
| Q |
451 |
ttaa |
454 |
Q |
| |
|
|||| |
|
|
| T |
23508371 |
ttaa |
23508368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 30731181 - 30731244
Alignment:
| Q |
248 |
caaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtg |
311 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||||||||||| | | |||||||| |
|
|
| T |
30731181 |
caaaacatgtctttcacggtgcaaattgatttttcgccattagatatattaataaattattgtg |
30731244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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