View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082-Insertion-13 (Length: 469)

Name: NF5082-Insertion-13

Description: NF5082

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5082-Insertion-13

[»] chr7 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 394; E-Value: 0

Query Start/End: Original strand, 7 - 469

Target Start/End: Complemental strand, 25303330 - 25302866

Alignment:

Q	7	aataccaacacaacaaactatcataattgactaccacccttcacatgaataaccaaccccacaaactcatcaaaatcctcaaccaaccgttcatcccctc	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25303330	aataccaacacaacacactatcataattgactaccacccttcacatgaataaccaaccccacaaactcatcaaaatcctcaaccaaccgttcatcccctc	25303231	T

Q	107	taccactcnnnnnnnnnnncttttcatcataacttttcatgaaatttaagatatatagcacgtgcagacaaatttcaccgaaaaccactctcaaataagc	206	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25303230	taccactctttttttttt-cttttcatcataacttttcatgaaatttaaaatatatagcacgtgcagacaaatttcaccgaaaaccactctcaaataagc	25303132	T

Q	207	accattatttttactctttatatattatcctctgtttttcttaactcaacaccgcttatactctgtttttatccaaataaccctgttttctccattatcc	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	25303131	accattatttttactctttatatattatcctctgtttttcttaactcaacaccgcttatactctgtttttatccaaatgaccctgttttctccgttatcc	25303032	T

Q	307	ttttttccctttcaccacaccaccattaccaatgcttcccttttaagaaaatcaacattttctcacacccttttgaccctttttcacaatatatttatta	406	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25303031	ttttttccctttcaccacaccaccattaccaatgcttcccttttaagaaaaccaacattttctcacacccttttgaccctttttcacaatatatttatta	25302932	T

Q	407	aatcacgtgtttcaaacaccaccaaaatacac---catctttttcttcattttcttcctctgtatc	469	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25302931	aatcacgtgtttcaaacaccaccaaaatacaccatcatctttttcttcattttcttcctctgtatc	25302866	T

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