View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082-Insertion-14 (Length: 468)

Name: NF5082-Insertion-14
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082-Insertion-14
NF5082-Insertion-14
[»] chr7 (7 HSPs)
chr7 (8-468)||(19721528-19721988)
chr7 (270-465)||(19351175-19351370)
chr7 (250-465)||(19779351-19779566)
chr7 (250-465)||(19887817-19888032)
chr7 (251-465)||(19357657-19357874)
chr7 (98-146)||(12820317-12820365)
chr7 (101-229)||(19779208-19779336)
[»] chr3 (2 HSPs)
chr3 (250-465)||(32578971-32579186)
chr3 (247-465)||(12734896-12735123)
[»] scaffold0464 (1 HSPs)
scaffold0464 (249-463)||(7809-8023)
[»] chr2 (4 HSPs)
chr2 (249-465)||(18908915-18909131)
chr2 (267-465)||(18913663-18913861)
chr2 (353-465)||(18920871-18920983)
chr2 (101-222)||(18921079-18921200)
[»] chr6 (1 HSPs)
chr6 (278-453)||(14749174-14749349)
[»] chr5 (1 HSPs)
chr5 (100-143)||(28764324-28764367)
[»] chr8 (2 HSPs)
chr8 (266-316)||(11338839-11338889)
chr8 (266-310)||(11345371-11345415)


Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 19721528 - 19721988
Alignment:
Q  8 aaaaatagaaactggctccgtttttggaatccggccactcattcgttatctgaaaaactattcttgttgagccatggtcgacacaccaaattcacatttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19721528 aaaaatagaaactggctccgtttttggaatccggccactcattcgttatctgaaaaactattcttgttgagccatggtcgacacaccaaattcacatttg 19721627  T
Q  108 gttatgacatttcaactaaaacttataaggtggtggcctactctgaatacaatgtgaaaattctcaccttgggtgataatgtatggaggaatatccaaag 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  19721628 gttatgatatttcaactaaaacttataaggtggtggcctactctgaatacaatgtgaaaattctcaccttgggtgataatgtatggaggaatatacgaag 19721727  T
Q  208 ttttcctgttgttccttttgatgttgtgcctcctaatggctattgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggct 307  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19721728 ttttcctgttgttccttttcatgttgtgcctcctaatggcaattgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggct 19721827  T
Q  308 attcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19721828 attcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtaattgtctcgcttgatctggctacggagacatatcaacagctgttgc 19721927  T
Q  408 cacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggactg 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19721928 cacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggactg 19721988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 270 - 465
Target Start/End: Complemental strand, 19351370 - 19351175
Alignment:
Q  270 atggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgtctc 369  Q
    ||||||| |||||||| ||  ||||||||||||||||||||| ||| |  ||| | ||| |||||| |||||||  | ||||||||||||||||| | ||    
T  19351370 atggtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagaatcgagcaatttgtgattatttc 19351271  T
Q  370 gcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatgga 465  Q
     |||||||||| ||||||||||||||||||| | |||||||||   || ||||||||||||||| ||| |||||| || |||||||||||||||||    
T  19351270 acttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtattgatgga 19351175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 250 - 465
Target Start/End: Original strand, 19779351 - 19779566
Alignment:
Q  250 ttgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtc 349  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||| | ||| || ||| | |||| |||||||| | |     
T  19779351 ttgtcatccatatgtgaataatggtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaatt 19779450  T
Q  350 gagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctg 449  Q
    || |||||| | ||  |||| ||||||||| |||| ||||| || |||||  ||  ||||||| |||| |||||||| |||||| ||||||| ||  |||    
T  19779451 gatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctg 19779550  T
Q  450 ttactgtattgatgga 465  Q
    ||||||||||||||||    
T  19779551 ttactgtattgatgga 19779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 250 - 465
Target Start/End: Complemental strand, 19888032 - 19887817
Alignment:
Q  250 ttgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtc 349  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||| | ||| || ||| | |||| |||||||| | |     
T  19888032 ttgtcatccatatgtgaataatggtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaatt 19887933  T
Q  350 gagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctg 449  Q
    || |||||| | ||  |||| ||||||||| |||| ||||| || |||||  ||  ||||||| |||| |||||||| |||||| ||||||| ||  |||    
T  19887932 gatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctg 19887833  T
Q  450 ttactgtattgatgga 465  Q
    ||||||||||||||||    
T  19887832 ttactgtattgatgga 19887817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 251 - 465
Target Start/End: Original strand, 19357657 - 19357874
Alignment:
Q  251 tgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactg---agtatcaatggactgatattttag 347  Q
    |||||||||||| |||||  ||| || |||||||| ||||||||||||||||||||||||||||| | |||||   | ||| |||||  |||||||  |     
T  19357657 tgtcatccatttttgaattgtggcgtgtatgtgagaggcactattaactggttggctattcgaaatatgactgatcaatatgaatggcgtgatattacaa 19357756  T
Q  348 tcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtc 447  Q
    | || ||||||||||| ||||| ||||||||||| ||||||||||||   ||| || ||||||||   || ||||||||||||||| || || |||| |     
T  19357757 ttgatcaatttgtgatcgtctcacttgatctggccacggagacatataggcagttgctgccacctagcggttttgttgaagtaccacctattcagccatt 19357856  T
Q  448 tgttactgtattgatgga 465  Q
    ||| ||||||||||||||    
T  19357857 tgtaactgtattgatgga 19357874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 12820365 - 12820317
Alignment:
Q  98 ttcacatttggttatgacatttcaactaaaacttataaggtggtggcct 146  Q
    ||||||||||||||||| | ||||||| | ||||| |||||||||||||    
T  12820365 ttcacatttggttatgataattcaactgacacttacaaggtggtggcct 12820317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 19779208 - 19779336
Alignment:
Q  101 acatttggttatgacatttcaactaaaacttataaggtggtggcctactctgaatacaatgtgaaaattctcaccttgggtgataatgtatggaggaata 200  Q
    |||||||| ||||| ||||||| | | |||||||||||||||||||  ||||   || | || |||||| |||  ||| |||||||| | |||||  |||    
T  19779208 acatttggatatgatatttcaaatgacacttataaggtggtggccttttctgccgacgaggtcaaaattttcagtttgagtgataatatttggagagata 19779307  T
Q  201 tccaaagttttcctgttgttccttttgat 229  Q
    | | |||||||||  ||||||||||||||    
T  19779308 ttccaagttttcccattgttccttttgat 19779336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 250 - 465
Target Start/End: Complemental strand, 32579186 - 32578971
Alignment:
Q  250 ttgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtc 349  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| | |||||| ||| || ||| |||||||| | ||    
T  32579186 ttgtcatccatatgtgaataacggtgtgtatgtgagtggcactattaattggttggctattcgaaataagactgaatatgaaaggaatgatatttcaatc 32579087  T
Q  350 gagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctg 449  Q
    ||||||||| | ||| | || ||||||||| ||||||||||||| | |||  || ||||| |  |||| ||||||||||||||| | ||||||||  |||    
T  32579086 gagcaatttctcattttatcacttgatctgactacggagacataccgacatttgctgccatcgcagggatttgttgaagtaccaccggttgagccagctg 32578987  T
Q  450 ttactgtattgatgga 465  Q
    ||||||| ||||||||    
T  32578986 ttactgtgttgatgga 32578971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 465
Target Start/End: Complemental strand, 12735123 - 12734896
Alignment:
Q  247 ctattgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacac---------gactgagtatcaatggact 337  Q
    ||||||||||||||||| || | ||||||  ||||| || |||||| |||||||||||||||||||||| |          || ||| ||| |||||| |    
T  12735123 ctattgtcatccatttgcgagtcatggtgcgtatgtaagtggcactgttaactggttggctattcgaaatattaaaaatatgaatgaatatgaatggaat 12735024  T
Q  338 gatattttagtcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactg 437  Q
    ||||||| |||| | ||||||||||| || || |||| ||||||||| ||||||| |   ||| ||||||||||  | || ||||||||| ||||| |||    
T  12735023 gatatttcagtcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgttgccacccaacggttttgttgaaataccacctg 12734924  T
Q  438 ttgagccgtctgttactgtattgatgga 465  Q
    ||||||| ||||||||||||||||||||    
T  12734923 ttgagccatctgttactgtattgatgga 12734896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 463
Target Start/End: Original strand, 7809 - 8023
Alignment:
Q  249 attgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagt 348  Q
    ||||||||||||||||||    |||||  |||||||| |||||| |||||||||||||||||||||| | || ||| ||| |||||| |||||||| | |    
T  7809 attgtcatccatttgtgagccgtggtgcgtatgtgagtggcactgttaactggttggctattcgaaatatgaatgaatatgaatggaatgatatttcaat 7908  T
Q  349 cgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtct 448  Q
    | | ||||||||||| || || |||| ||||||||| ||||||| |   ||| || |||||||  | || ||||||||||||||| |||||||||| |||    
T  7909 caaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatct 8008  T
Q  449 gttactgtattgatg 463  Q
    |||||||||||||||    
T  8009 gttactgtattgatg 8023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 465
Target Start/End: Complemental strand, 18909131 - 18908915
Alignment:
Q  249 attgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagt 348  Q
    |||||| || ||| ||| |||| ||||| |||||||| ||  ||||||||||||||||||||||| | | |||||| ||| |||||| |||||||    |    
T  18909131 attgtcgtcgattggtggataacggtgtgtatgtgagtggttctattaactggttggctattcgagataagactgaatatgaatggaatgatattactat 18909032  T
Q  349 cgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtct 448  Q
    | | ||||||||||| |||||||||||| ||| ||| ||||||||||  ||  || ||||||||   || ||||||||||||||| ||||||| ||||||    
T  18909031 caaacaatttgtgatagtctcgcttgatttggatacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtct 18908932  T
Q  449 gttactgtattgatgga 465  Q
    |||| ||| ||||||||    
T  18908931 gttagtgtgttgatgga 18908915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 465
Target Start/End: Complemental strand, 18913861 - 18913663
Alignment:
Q  267 ataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgt 366  Q
    |||| ||||| |||||||| || || ||||||||||||||||||||| | | |||  | ||| |||||| |||||||    | || ||||||||||| ||    
T  18913861 ataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagt 18913762  T
Q  367 ctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatgga 465  Q
    |||||||||| ||||||| |||||||| |||||| |||||||||||   || |||||||||| |||| | ||||| |||||||||| ||| ||||||||    
T  18913761 ctcgcttgatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagcaccacccgttgaaccgtctgttagtgtgttgatgga 18913663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 465
Target Start/End: Complemental strand, 18920983 - 18920871
Alignment:
Q  353 caatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgtta 452  Q
    ||||||||||| |||||||||||| ||| ||| ||||||||||  ||  || ||||||||   || ||||||||||||||| ||||||| ||||||||||    
T  18920983 caatttgtgatagtctcgcttgatttggttacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgtta 18920884  T
Q  453 ctgtattgatgga 465  Q
     ||| ||||||||    
T  18920883 gtgtgttgatgga 18920871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 18921200 - 18921079
Alignment:
Q  101 acatttggttatgacatttcaactaaaacttataaggtggtggcctactctgaatacaatgtgaaaattctcaccttgggtgataatgtatggaggaata 200  Q
    |||||||| ||||| |||||||   |||||||||||||||||| || |||||   |||  |||||| || |||  ||| |||||||||| |||||| |||    
T  18921200 acatttggctatgatatttcaaacgaaacttataaggtggtggacttctctgctaacacggtgaaagttttcagtttgagtgataatgtttggagggata 18921101  T
Q  201 tccaaagttttcctgttgttcc 222  Q
    | |||||||||||| |||||||    
T  18921100 ttcaaagttttcctattgttcc 18921079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 453
Target Start/End: Original strand, 14749174 - 14749349
Alignment:
Q  278 tatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgtctcgcttgatc 377  Q
    |||||||| |||| |||||||||||||||||||| ||| | ||| || ||| | | || |||||||| | |||| |||||| | ||||| || |||||||    
T  14749174 tatgtgagtggcagtattaactggttggctattcaaaataagaccgaatatgattagaatgatatttcaatcgaccaatttctcattgtttcacttgatc 14749273  T
Q  378 tggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttac 453  Q
    |  ||||||||||||| |  |   | ||||||||| |||| ||||||||||||||| |||||||||| ||||||||    
T  14749274 taactacggagacataccgtcgtttcttgccacctcagggatttgttgaagtaccatctgttgagccatctgttac 14749349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 28764367 - 28764324
Alignment:
Q  100 cacatttggttatgacatttcaactaaaacttataaggtggtgg 143  Q
    |||||||||||||||||||||||||  || ||||||||||||||    
T  28764367 cacatttggttatgacatttcaactggaagttataaggtggtgg 28764324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 11338889 - 11338839
Alignment:
Q  266 aataatggtgtttatgtgagcggcactattaactggttggctattcgaaac 316  Q
    ||||||||||| ||| |||| ||||||||| ||||||||||||||| ||||    
T  11338889 aataatggtgtatatttgagaggcactatttactggttggctattcaaaac 11338839  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 11345415 - 11345371
Alignment:
Q  266 aataatggtgtttatgtgagcggcactattaactggttggctatt 310  Q
    ||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  11345415 aataatggtgtgtatttgagaggcactatttactggttggctatt 11345371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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