View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082-Insertion-15 (Length: 443)
Name: NF5082-Insertion-15
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-15 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 48098225 - 48097896
Alignment:
| Q |
8 |
tttagtgctctagtggtctccactacaatattcatcctaaccttctaagttaattttccctctattgctttgttgccatgaacgtgatcagccacagttc |
107 |
Q |
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| T |
48098225 |
tttagtgctctagtggtctccactacaatattcatcctaaccttctaagttaattttccctctattgctttgttgccatgaaggtgattagccacagttc |
48098126 |
T |
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| Q |
108 |
cattagatacatacccgtagacaagcatgcaattgcgacttccacgtgaggtgcacccatattcattgagcttcttaaacatgtgatacgagcatctttc |
207 |
Q |
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| T |
48098125 |
cattagatacatacccgtagacaagcatgcaattgcgacttccacgtgaggtgcacccatattcattgagcttcttaaacatgtgatacgagcatctttc |
48098026 |
T |
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| Q |
208 |
--aaatactcacattgcctcaattacttcaattttaatagtggaagtggagaattgttgtgaaactacataaatgagctaaggaccatctttctaaaatt |
305 |
Q |
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| T |
48098025 |
aaaaatactcacattgcctcaattacttcaattttaatagcggaagtggagaattgttgtgaaactacataaatgagctaaggaccatctttctaaaatt |
48097926 |
T |
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| Q |
306 |
gcagaaacaactaaaataggaagaaaaata |
335 |
Q |
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| T |
48097925 |
gcagaaacaactaaaataggaagaaaaata |
48097896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 48097903 - 48097832
Alignment:
| Q |
372 |
gaaaaatactttgatttcttgtcacattgcattatatttctttccactactatataaaccgcctcactttgc |
443 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
48097903 |
gaaaaatactttgatttcttgtcacattgcattttttttctttccactactatataaaccgcctcactttgc |
48097832 |
T |
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