View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082-Insertion-16 (Length: 231)
Name: NF5082-Insertion-16
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-16 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 40843211 - 40843433
Alignment:
| Q |
8 |
tctgccacaccaaattcacccaaaattgacatgaagaaacatataggatgtccatactcaatcatagcaatggattttttcaacacaaccaggtgtttag |
107 |
Q |
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| T |
40843211 |
tctgccacaccaaattcacccaaaattgatatgaagaaacatataggatgtccatactcgatcatagcaatggattctttcaacacaacaaagtgtttag |
40843310 |
T |
|
| Q |
108 |
caaatttaacattattttggctcaaggggaagggtgttttaacgaagtcttcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttc |
207 |
Q |
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| T |
40843311 |
gaaatttaacattattttggctcaaggggaagggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttc |
40843410 |
T |
|
| Q |
208 |
gtagccccaccaatgacacatcc |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
40843411 |
gtagccccaccaatgacacatcc |
40843433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 40847595 - 40847756
Alignment:
| Q |
61 |
atactcaatcatagcaatggattttttcaacacaaccaggtgtttagcaaatttaacattattttggctcaaggggaagggtgttttaacgaagtcttcg |
160 |
Q |
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| T |
40847595 |
atactcgatcgtagcaatggattctttcaacaccaccaagtgtttataaaatttatcataattttggctcaag-----gggtgttttaacgaagtcctcg |
40847689 |
T |
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| Q |
161 |
tcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacat |
228 |
Q |
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| T |
40847690 |
tcactcaagtt-aatgataccaacacatgtaccccaaaataatcttcgaagccccacgaatgacacat |
40847756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 40847379 - 40847435
Alignment:
| Q |
8 |
tctgccacaccaaattcacccaaaattgacatgaagaaacatataggatgtccatac |
64 |
Q |
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| T |
40847379 |
tctgccacaccaaattcacccaaaattgatatcaagaaacaaagaggatctccatac |
40847435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 46502899 - 46502686
Alignment:
| Q |
11 |
gccacaccaaattcacccaaaattgacatgaagaaacatataggatgtccatactcaatcatagcaatggattttttcaacacaaccaggtgtttagcaa |
110 |
Q |
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|||||||||||||||||||||||||| ||| | | ||| || || | |||||| |||||||||||||| | ||||||||| |||| ||||||||||| |
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| T |
46502899 |
gccacaccaaattcacccaaaattgatatgtaaagacaagaagaatcttgatactcgatcatagcaatggactctttcaacaccaccatgtgtttagcaa |
46502800 |
T |
|
| Q |
111 |
atttaacattattttggctcaaggggaagggtgttttaacgaagtcttcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgta |
210 |
Q |
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|| || ||| ||| ||| | |||||||||| ||| |||| | || | ||||| ||||||||||||||||| || ||||||||||||||||| || |
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| T |
46502799 |
atctaccataattatggtt------gaagggtgttgtaatgaagacctcattactcaggttaaatgataccaacacctcatccccaaaataatcttcata |
46502706 |
T |
|
| Q |
211 |
gccccaccaatgacacatcc |
230 |
Q |
| |
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||||||||| || ||||||| |
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| T |
46502705 |
gccccaccagtggcacatcc |
46502686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 4041419 - 4041513
Alignment:
| Q |
136 |
gaagggtgttttaacgaagtcttcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcc |
230 |
Q |
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|||||||||| ||| |||| | || ||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||| ||||||| |
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| T |
4041419 |
gaagggtgttgtaatgaagacctcatcactcaagttaaatgataccaacacctcatccccgtcgtaatcttcatatccccaccaatggcacatcc |
4041513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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