View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082-Insertion-2 (Length: 1114)
Name: NF5082-Insertion-2
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 302 - 1034
Target Start/End: Original strand, 10592653 - 10593379
Alignment:
| Q |
302 |
aaaaaatgaaataattgaatgtaaaatgttatttgtagattattagaatatatggatgtgaacttgaatgtgaattgaagtaacttagttatatgctatg |
401 |
Q |
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| T |
10592653 |
aaaaaatgaaataattgaatgtaaaatgttatttgtagattattagaatatatggatgtgaacttgaatgtgaattgaagtaatttagttatatgctatg |
10592752 |
T |
|
| Q |
402 |
aagcacaaacatagagactgaacactgacatgtggacacgggtagtaatttgaaaaatgacataattaaatgtaataaaaaatgttgatggtgtgtctag |
501 |
Q |
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| T |
10592753 |
aagcacaaacatagagactgaacactgacatgtggacactggtagtaatttgaaaaatgacataattaaatgtaataaaaaatgttggtggcgtgtctag |
10592852 |
T |
|
| Q |
502 |
atgtgttggtgtcgtgtctgacaacgaccgactttaatcataaatgttgttgctacattggttttatgtgatttggtttgtgtgag-----ttgagttga |
596 |
Q |
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| T |
10592853 |
atgtgttggtgtcgtgtctgacaacgaccgactttaatcataaatgttgttgctacattggttttatgtgatttggtttgtgtgagttgagttgagttat |
10592952 |
T |
|
| Q |
597 |
gttatgttatgcaaggtgttaaattaggtggatgtttggattgacggtgagataggtagaattatggagtgataacgtgattttgatt--aaaaaactac |
694 |
Q |
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| T |
10592953 |
gttatgttatgtaaggtgttaaattaggtggatgtttggattgacggtgagataggtagaattatggagtgataacgtgattttgattaaaaaaaactac |
10593052 |
T |
|
| Q |
695 |
attttgaagtttcaacaaaatcatggtgtcgctgtgattttattaaaatcgttgtgattctaaatatgtgctaagatggatttctcataagtgaggagag |
794 |
Q |
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| T |
10593053 |
attttgaagtttcaacaaaatcatggtgtcgctg--------------------tgattctaaatatgcgctaagatggatttctcataagtgaggagag |
10593132 |
T |
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| Q |
795 |
ggcgaagtatgtattctcaactaataatgagaaaatcaaagatttatgttttaacttaactagcattgtcagtcacggattgtgggaaaacgccaggtgt |
894 |
Q |
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| T |
10593133 |
ggcgaagtatgtattctcaactaataatgagaaaatcaaagatttatgttttaacttaactagcattgtcagtcatggattgt-ggaaaacagcatgttg |
10593231 |
T |
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| Q |
895 |
ttcaggtttcgctgaccaaatagtgatatagggcctgctatagcagctattttattgtg-atagtgcatcgcaaaacgatggcgatt--gtcaa--tttg |
989 |
Q |
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| T |
10593232 |
ttcaagttttgctgacccaatagtgatatagggcctgctatagccgctattttatgttgaatagtgcatcgcaaaacgatggcgatttgttcaaattttg |
10593331 |
T |
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| Q |
990 |
cta-cacgctggctgtatagtt--gttttgcatatgcatttaatatca |
1034 |
Q |
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| T |
10593332 |
ctatcacgctggctgtatagtttgtttttgcatatgcatttaatatca |
10593379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 10592330 - 10592624
Alignment:
| Q |
8 |
atggggagtgtgagttgaatttggcgccggagttggttggtgggagatgtgggacagcggttttgacgccgaatgggaagagacaggctagggctttggc |
107 |
Q |
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| T |
10592330 |
atggggagtgtgaattgaatttggcgccggagttggttggtgggagatgtgggacggcggttttgacgccgaatgggaagagacaggctagggctttggc |
10592429 |
T |
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| Q |
108 |
tgtgtttttgaagtctatgggggttaggtttaatgctgttttttgttcgccgttggatcgggcgaagacgactgcggtttccgtttgtaaggtagttttt |
207 |
Q |
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| T |
10592430 |
tgtgtttttgaagtctatgggggttaggtttaatggtgttttttgttcgccgttggatcgggcgaagacgactgcggtttccgtttgtaaggtagttttt |
10592529 |
T |
|
| Q |
208 |
cttatcaatttcgagtgttttttgttgattatatgaatgtgaatttgaattgaggtaagtaacttaattatattataggctatgaagcccaaaca |
302 |
Q |
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| T |
10592530 |
cttatcaattttgagtgttttttgttgattatatgaatgtgaatttgaattgaggtaagtaacttagttatattataggctatgaagcccaaaca |
10592624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 18586372 - 18586316
Alignment:
| Q |
410 |
acatagagactgaacactgacatgtggacacgggtagtaatttgaaaaatgacataat |
467 |
Q |
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| T |
18586372 |
acatagacactga-cactgacatgtcgatacggataataatttgaaaaatgacataat |
18586316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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