View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082-Insertion-4 (Length: 944)

Name: NF5082-Insertion-4
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082-Insertion-4
NF5082-Insertion-4
[»] chr8 (8 HSPs)
chr8 (20-944)||(14003528-14004451)
chr8 (8-944)||(5766341-5767276)
chr8 (30-156)||(34935748-34935874)
chr8 (227-328)||(17635611-17635712)
chr8 (272-402)||(18314638-18314768)
chr8 (883-928)||(17627610-17627655)
chr8 (227-328)||(17642890-17642991)
chr8 (362-399)||(17643025-17643062)
[»] chr4 (10 HSPs)
chr4 (456-577)||(1481511-1481632)
chr4 (8-287)||(1481684-1481957)
chr4 (230-399)||(8186317-8186486)
chr4 (777-908)||(641449-641580)
chr4 (458-573)||(8186539-8186654)
chr4 (239-331)||(661855-661947)
chr4 (759-819)||(1601013-1601073)
chr4 (462-524)||(532630-532692)
chr4 (451-505)||(7225324-7225378)
chr4 (780-905)||(3438101-3438226)
[»] chr6 (5 HSPs)
chr6 (227-310)||(7132323-7132406)
chr6 (227-310)||(7135246-7135329)
chr6 (227-310)||(7138169-7138252)
chr6 (270-378)||(6403528-6403636)
chr6 (227-331)||(8913375-8913479)
[»] chr5 (2 HSPs)
chr5 (762-858)||(38266985-38267081)
chr5 (296-399)||(29021726-29021829)
[»] chr2 (1 HSPs)
chr2 (231-331)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (456-501)||(19467627-19467672)
chr1 (135-168)||(30827961-30827994)


Alignment Details
Target: chr8 (Bit Score: 877; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 20 - 944
Target Start/End: Complemental strand, 14004451 - 14003528
Alignment:
Q  20 cgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14004451 cgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccaaccctacctgtcc 14004352  T
Q  120 tccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttccc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004351 tccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttccc 14004252  T
Q  220 aatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcactt 319  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14004251 aatgttcaaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcactt 14004152  T
Q  320 atttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004151 atttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaa 14004052  T
Q  420 tcattaatcacacacgtgctaccttctccactggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacct 519  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004051 tcattaatcacacacatgctaccttctccactggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacct 14003952  T
Q  520 caacggcactttgctttctcacttgttcaagaactgcaagtttctccaagaggtcatcttgcttagatgtgaacaattaaccgtcgcaggcattgatctt 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14003951 caacggcactttgctttctcacttgttcaagaactgcaagtttctccaagatgtcatcttgcttagatgtgaacaattaaccgtcgcaggcgttgatctt 14003852  T
Q  620 gctctccgccagaaaccaacattgacttctttatccattacaggtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttga 719  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14003851 gctctccgccagagaccaacattgacttctttatccattacaggtactgttactactggtttggaatatcttacctcacatttcatcgactccttgttga 14003752  T
Q  720 gtttgaagggatttgacttctcttcttttgacgggatttcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 819  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003751 gtttgaaggga-ttgacttctcttcttttgacgggatttcatatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 14003653  T
Q  820 tactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgatttttt 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003652 tactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgatttttt 14003553  T
Q  920 gaatgatcattgtgttgctgagttg 944  Q
    |||||||||||||| ||||||||||    
T  14003552 gaatgatcattgtgctgctgagttg 14003528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 8 - 944
Target Start/End: Original strand, 5766341 - 5767276
Alignment:
Q  8 gaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaa 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  5766341 gaccaccgtaagcggtatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtctaactatcttgtatccag 5766440  T
Q  108 ccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  5766441 ccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattacggtgacctagatgcacttcttactcaaat 5766540  T
Q  208 ctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaact 307  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5766541 ctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaact 5766640  T
Q  308 ttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacctcgctt 407  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||| ||||||||||    
T  5766641 ttgacctcacttatttgttccaaccttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgctagaagaacttgacctcgctt 5766740  T
Q  408 acccctctaaaatcattaatcacacacgtgctaccttctccactggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctctta 507  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766741 acccctctaaaatcattaatcacacacatgctaccttctccactggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctctta 5766840  T
Q  508 tcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaagtttctccaagaggtcatcttgcttagatgtgaacaattaaccgtcgca 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5766841 tcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaagtttctccaagaggtcatcttgcttagatgtgaacaattaaccatcgca 5766940  T
Q  608 ggcattgatcttgctctccgccagaaaccaacattgacttctttatccattacaggtactgttactactggtttggaacatcttacctcacatttcatcg 707  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5766941 ggcgttgatcttgctctcctccagaaaccaacattgacttctttatccattacatgtactgttactactggtttggaacatcttacctcacatttcatcg 5767040  T
Q  708 actccttgttgagtttgaagggatttgacttctcttcttttgacgggatttcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctt 807  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5767041 actccttgttgagtttgaaggga-ttgacttctcttcttttgacgggatttcgtatctcagatcaatttctctcctccattgcaatggaaagtcttcctt 5767139  T
Q  808 tgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaata 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767140 tgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaata 5767239  T
Q  908 tgctgattttttgaatgatcattgtgttgctgagttg 944  Q
    | |||||||||||||||||||||||||||||||||||    
T  5767240 tactgattttttgaatgatcattgtgttgctgagttg 5767276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 34935748 - 34935874
Alignment:
Q  30 agtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcct 129  Q
    ||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||| ||| ||||| |   ||| |||||| |||  ||| ||| ||||    
T  34935748 agtctctctctgtctcctccaaacacttcctctccgtcaccaaccgtcacaaattctctctcactatttctgatcaaaccctcccttcccttcctcgcct 34935847  T
Q  130 attacaaaggttcaccaaactcacctc 156  Q
     || |||||||| ||||| ||||||||    
T  34935848 cttccaaaggtttaccaacctcacctc 34935874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  227 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 326  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  327 cc 328  Q
    ||    
T  17635711 cc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 402
Target Start/End: Original strand, 18314638 - 18314768
Alignment:
Q  272 aatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctg 371  Q
    ||||| || |||| ||||||||  || ||||||||||||||||||||    |||||  || || | |||||  || |||||||||||   ||||||||||    
T  18314638 aatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctg 18314737  T
Q  372 attgttttcctttgctagaagaactcgacct 402  Q
    ||||||| |||||||| ||||||||||||||    
T  18314738 attgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 883 - 928
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
Q  883 gtatccaacatttggatcttcaatatgctgattttttgaatgatca 928  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  17627610 gtatccaacatttggatcttcagtatgcttattttttgaataatca 17627655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  227 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 326  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  327 cc 328  Q
    ||    
T  17642990 cc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 17643025 - 17643062
Alignment:
Q  362 ctcattgctgattgttttcctttgctagaagaactcga 399  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  17643025 ctcatcgctgattgtttccctttgctagaagaactcga 17643062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 456 - 577
Target Start/End: Complemental strand, 1481632 - 1481511
Alignment:
Q  456 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactg 555  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||  |||| |||||| || |||||||| ||| ||||||||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgctttttcaattgttcaagaactg 1481533  T
Q  556 caagtttctccaagaggtcatc 577  Q
    |||||||||| || ||||||||    
T  1481532 caagtttctcgaaaaggtcatc 1481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 1481957 - 1481684
Alignment:
Q  8 gaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaa 107  Q
    |||||||| || |||||  |||||||||| || ||||| ||||||||||||||||||||||||||| || ||||||||| ||| ||||||| | || |||    
T  1481957 gaccaccggaaacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccgtcaccaacagttacaaattctctctcactatctggcattcaa 1481858  T
Q  108 ccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaat 207  Q
    ||   | |  ||| ||  ||||  |||||||||||||||| ||||||||  | ||||| || | ||| ||   | |||||||||| ||||| || |||||    
T  1481857 cc---cgttaccttccacgcctcctacaaaggttcaccaatctcacctcttttgacctttccttctactactttaacctcgatgcgcttctcacccaaat 1481761  T
Q  208 ctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt 287  Q
    |||  | ||||||   || |||||||||||||||||| | || |||||||||| |||||| |||||||| ||||||||||    
T  1481760 ctcctgtttccca---ttgaaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt 1481684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 230 - 399
Target Start/End: Original strand, 8186317 - 8186486
Alignment:
Q  230 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 329  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  330 accttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcga 399  Q
    || || | ||| | |||||||||||  ||   ||||| || |||||||||||||| ||||||||||||||    
T  8186417 acattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcga 8186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 777 - 908
Target Start/End: Complemental strand, 641580 - 641449
Alignment:
Q  777 ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt 876  Q
    |||||||| ||||||||| || | |||||||||| ||| ||||| ||| || ||||| |||| |||||||||  ||||||||  | ||||||||| |||     
T  641580 ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga 641481  T
Q  877 cgaaacgtatccaacatttggatcttcaatat 908  Q
      ||| || | |||||| ||||||||||||||    
T  641480 gtaaatgtttacaacatctggatcttcaatat 641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 458 - 573
Target Start/End: Original strand, 8186539 - 8186654
Alignment:
Q  458 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgca 557  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| ||| |||||  |||  |||||| ||  ||||||| ||||||||| ||||| || |    
T  8186539 gaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgta 8186638  T
Q  558 agtttctccaagaggt 573  Q
    ||  |||| |||||||    
T  8186639 agcatctcgaagaggt 8186654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  239 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 331  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 819
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
Q  759 cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 819  Q
    |||||||| ||||| || |||||||| ||||||| ||||| || |||||||||||||||||    
T  1601073 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg 1601013  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 532692 - 532630
Alignment:
Q  462 ctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacg 524  Q
    ||||||||||| ||||  |||||||||||||||||||||| |||  ||||| |||| ||||||    
T  532692 ctctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacg 532630  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 7225324 - 7225378
Alignment:
Q  451 tggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctct 505  Q
    |||| ||||||||||||||| ||||||  |||||||||| | |||||||||||||    
T  7225324 tggagtagaggctctttcatcagcacttttcaaactccgtagggttaatctctct 7225378  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 905
Target Start/End: Original strand, 3438101 - 3438226
Alignment:
Q  780 tcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcga 879  Q
    ||||| |||||||| | | ||||||||||||| |||||||| |||  | ||||| |||| |||| |||| ||| |||||  | | ||||||| ||||       
T  3438101 tcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T
Q  880 aacgtatccaacatttggatcttcaa 905  Q
    || |||| ||||||||||||||||||    
T  3438201 aatgtatacaacatttggatcttcaa 3438226  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  227 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 310  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  227 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 310  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  227 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 310  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 6403636 - 6403528
Alignment:
Q  270 ctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgc 369  Q
    ||||||| |||||||||||||| || ||  | || ||||||||||| |||  ||||||| || || |||||||||||||| || |||||   ||||||||    
T  6403636 ctaatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgc 6403537  T
Q  370 tgattgttt 378  Q
     ||||||||    
T  6403536 cgattgttt 6403528  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  227 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 326  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  327 ccaac 331  Q
    |||||    
T  8913475 ccaac 8913479  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 762 - 858
Target Start/End: Original strand, 38266985 - 38267081
Alignment:
Q  762 atctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatct 858  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| ||||  ||| | |||||| |||| || ||||  ||||||||||    
T  38266985 atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatct 38267081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 29021829 - 29021726
Alignment:
Q  296 aacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaac 395  Q
    |||||||| ||||||||||| || | ||||| | ||||| |  | || ||||||||| |||||  ||| ||||||||||| || |||||||| |||||||    
T  29021829 aacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaagaac 29021730  T
Q  396 tcga 399  Q
    ||||    
T  29021729 tcga 29021726  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 231 - 331
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  231 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 330  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  331 c 331  Q
    |    
T  1036670 c 1036670  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 19467627 - 19467672
Alignment:
Q  456 tagaggctctttcattagcactcatcaaactccgcaaggttaatct 501  Q
    |||||||||||||| | |||||  ||||||||||||||||||||||    
T  19467627 tagaggctctttcacttgcacttctcaaactccgcaaggttaatct 19467672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 30827994 - 30827961
Alignment:
Q  135 aaaggttcaccaaactcacctccctcgacctctc 168  Q
    ||||||||||||| ||||||||||||||||||||    
T  30827994 aaaggttcaccaatctcacctccctcgacctctc 30827961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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